Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2477 ATGAGAGAGAACCATCCTTCATCAAACTCCGAGGACGACCATCGATCCTCCCTGCTGGATCTGGCGCGTGCCGAAATCACGGAATCCTCGTCCTCCAAAACCCGAACCTGCGGCGGGTTCCCAGGTCCGGGTTCCGGGTCAGGTTCCTCGGAGTCGCAGGTCCCGTTCCTGGACCAGGTCCTCGAGAACGTTCTGGAAAACGTGCTCCACTTTCTCTCGTCGCGGCGCGACCGCAACGCGGCCTCATTGGTGTGCCGTTGCTGGTACCGTGTGGAGGCCCTCACCCGATCCGAGCTCTTCATCGGGAACTGCTACGCGCTCTCGCCCGCCCGCGCCACCGCGCGGTTCACGCGCGTGAAGTCCGTCACCTTGAAGGGGAAACCGCGGTTCGCGGACTTCGATCTGATGCCGCCCGATTGGGGGGCCCACTTTGCCCCTTGGGCCTCGGCCCTGGCCCAGGCCTACCCCTGGCTCGAGAAGCTCCACCTCAAACGCATGTCCATCACCGACCGCGACCTCGCCCTCGTCGCCGACTCCTTCGCCGGCTTCCGCGAGCTCGTCCTCGTCTGCTGCGAGAACTTCGGCACGCGCGGCCTCGCCGCCATCGCCGGCAAGTGCAGAATGCTGAGGGTGCTTGAGCTTGTGGAATCTGTGGTGGAGGCTGAGGACGAAGATGAAGTGGATTGGATTTCGTGTTTTCCCGAGTCTCAAACGAATTTGGAGTCTCTTGTGTTTGATTGTGTTGAGTGTCCTATTAATTTCGAGGCTTTGGAGAGTTTAGTGGCTAGGTCACCTTCTTTGAAGAAGCTTCGTTTGAACCGCTTTGTTTCCATGGCTCAGCTGTATCGTTTATTGCTTCGAGCTCCGCAGCTTACTCACCTTGGAACAGGTTCCTTCAGTGCTAATGAGGCCGTGGCGGTTGGTGATCAGGAACTGGATTACGCAGCGGCGTTTCAAGCTTGCAGATCCTTGGTTTGCCTCTCTGGATTCAGGGAGATTTGGCCGGATTACCTTCCGGCGATTTATCCGGTCTGCGCGAATCTCACCTCGTTGAATTTGAGCTATGCTAATGTTGACGCGGAGCAGCTGAAGTCGGTTATTCGCCACTGTCATAAGCTGCAGATATTCTGGGTACTTGATTCGATATGCGATGAAGGCCTTCAGGCGGTGGCTGCAACTTGCAAGGACTTGCGCGAGCTTCGGGTTTTTCCTGTGGACACGAGGGAGGAGATTGATGGGCCTGTTTCTGAGGTGGGGTTTGAAGCGATTTCTCAGGGTTGTAGGAAGTTGGAATCGATTTTGTTTTTCTGCCAGAGGATGACTAATGCAGCTGTGGTGGCTATGTCAAAGAACTGCCCGGATCTTGTGGTGTTTCGGCTCTGTATAATTGGGCGTTATAGGCCGGATCCTGTGACTCAGGAACCCATGGATGAGGGTTTTGGTGCTATTGTTATGAATTGCAAGAAGCTCACTCGGCTTGCTGTGTCGGGTTTGCTGACTGATCATGCTTTTGAGTACATTGGAAAGTATGGGAAATTGGTTAGGACACTGTCAGTTGCCTTCAATGGGGACACTGACATGGGCCTTAAATATGTGCTTGAAGGATGCCCCAATTTGCAAAAGCTTGAAGTCAGGGATAGTCCTTTTGGGGATGTAGCTCTGCGATCTGGTTTGCATCATTATTACAACATGAGATTCCTCTGGATGTCGTCCTGTAAATTGATGCGCCAAGCTTGCCAAGAAGTTGCGCGAGCATTGCCCCGCCTGGTTTTGGAAGTGATCAACAGTGAGGAGAATGCAGGTGGTGATGATATTGAGATATTGTACATGTATCGGTCTCTTGATGGGCCACGGGATGATGCTCCAGGAGTTGTTACCATCCTGcattag 1890 0.5392 MRENHPSSNSEDDHRSSLLDLARAEITESSSSKTRTCGGFPGPGSGSGSSESQVPFLDQVLENVLENVLHFLSSRRDRNAASLVCRCWYRVEALTRSELFIGNCYALSPARATARFTRVKSVTLKGKPRFADFDLMPPDWGAHFAPWASALAQAYPWLEKLHLKRMSITDRDLALVADSFAGFRELVLVCCENFGTRGLAAIAGKCRMLRVLELVESVVEAEDEDEVDWISCFPESQTNLESLVFDCVECPINFEALESLVARSPSLKKLRLNRFVSMAQLYRLLLRAPQLTHLGTGSFSANEAVAVGDQELDYAAAFQACRSLVCLSGFREIWPDYLPAIYPVCANLTSLNLSYANVDAEQLKSVIRHCHKLQIFWVLDSICDEGLQAVAATCKDLRELRVFPVDTREEIDGPVSEVGFEAISQGCRKLESILFFCQRMTNAAVVAMSKNCPDLVVFRLCIIGRYRPDPVTQEPMDEGFGAIVMNCKKLTRLAVSGLLTDHAFEYIGKYGKLVRTLSVAFNGDTDMGLKYVLEGCPNLQKLEVRDSPFGDVALRSGLHHYYNMRFLWMSSCKLMRQACQEVARALPRLVLEVINSEENAGGDDIEILYMYRSLDGPRDDAPGVVTILH 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2477 629 MobiDBLite consensus disorder prediction 26 52 - -
Ssu6g2477 629 SUPERFAMILY RNI-like 83 590 - -
Ssu6g2477 629 SMART LRR_CC_2 427 451 IPR006553 -
Ssu6g2477 629 SMART LRR_CC_2 180 205 IPR006553 -
Ssu6g2477 629 SMART LRR_CC_2 155 179 IPR006553 -
Ssu6g2477 629 SMART LRR_CC_2 536 560 IPR006553 -
Ssu6g2477 629 SMART LRR_CC_2 487 510 IPR006553 -
Ssu6g2477 629 PANTHER F-BOX PROTEIN FBX14 46 627 - -
Ssu6g2477 629 Pfam F-box 58 97 IPR041567 -
Ssu6g2477 629 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 46 627 - -
Ssu6g2477 629 Gene3D Ribonuclease Inhibitor 98 628 IPR032675 -
Ssu6g2477 629 SUPERFAMILY F-box domain 50 91 IPR036047 GO:0005515
Ssu6g2477 629 Pfam Transport inhibitor response 1 protein domain 118 163 IPR041101 -
Ssu6g2477 629 Gene3D - 50 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2477 Ssu-Chr6 58331979 58334106 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2477 - - gmx:100775877 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2477 6 58331979 58334106 Ssu6g2477 6 58331979 58334106 ECH