Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2470 ATGAGAAGGTTCACGTGGTTAACGCCGTATCGGCGCCATTTGCTTTCGTCTGTGGCCTCAGAATCGCTCGTGGATAAAGGAGAATCGTTCAGCAAATTCTTGTCTTCTCGCCAATCGTTTTTGCTCACGCGAGCTTTGGTCAATTGCGGTTTCGTCACGAAAACTCTGATTCCGAGAATACCATTAAGATGTCGTTATTTTCATGCCACAGCATTTTCTTCTTCGGCTGGCCGAGACTACTATCGAATTCTTGGTGTTCCTGAAAATGCCAGTCAGGACGAGATAAAGAAGGCATTTCACTCGCTTGCTAAAAAGTACCATCCAGATGCAAATAAGAATAATCCATCTGCTAAGAGGAAATTTCAAGATATAAGAGAAGCTTATGAGACATTGAGAGACTCTAAAAAGCGAGCAGAGTTTGACAAgATGCGTACTCGTGGTTCCGAAGACATAGAATATGATCATGATGATGCAGAAAGGTTTAGAAATGCTTATCGTTCTCATTTTTCTGATTCATTTCATAAAGTATTCTCTGAGATTTTTGAAGAAGCAACAACTCAATTCTCATCAAATATAGAGGTGGAGTTGTCTCTTACTTTCTCAGAAGCAGCGAGAGGATGCACCAAACACGTGTCATTTGATGCATTAGTTCCCTGCGATTATTGCAATGGGCTGGGCTATCCATTTGAGGCCATCCCAAAAGTTTGTCCAACATGCAGGGGCTTAGGTCGAGTTACAATCCCTCCATTTACGTCAACATGCATTACTTGTAAAGGATCAGGCCGTGTCATTAAGgACTTTTGTATAACGTGTGGAGGATCTGGGGTGGTTGAAGGAGTTAAAGAGGTTAAAGTTACAATTCCAGCAGGTGTGGATTCAGGAGATACAATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAGTGGAGGTCGACCTGGAagtttatacattaaaataaagGTGGCTGAGGATTCAATATTTATCAGAGATGGTGCAGATATCTACGTGGATTCTAATATTAGCTTTACACAGGCTATTCTTGGTGGCAAAGTTGAGGTGCCTACTTTATCTGGGAAGATGCAATTAAAAATACCCAAGGGTGTTCAACATGGACAGCTTCTGGTATTAAGAGGCAAAGGACTACCAAAGCATGGATTTCTTGTACATCATGGGGATCAGTATGTACGATTCCGTCTAAACTTTCCCATGTAG 1212 0.4167 MRRFTWLTPYRRHLLSSVASESLVDKGESFSKFLSSRQSFLLTRALVNCGFVTKTLIPRIPLRCRYFHATAFSSSAGRDYYRILGVPENASQDEIKKAFHSLAKKYHPDANKNNPSAKRKFQDIREAYETLRDSKKRAEFDKMRTRGSEDIEYDHDDAERFRNAYRSHFSDSFHKVFSEIFEEATTQFSSNIEVELSLTFSEAARGCTKHVSFDALVPCDYCNGLGYPFEAIPKVCPTCRGLGRVTIPPFTSTCITCKGSGRVIKDFCITCGGSGVVEGVKEVKVTIPAGVDSGDTIHVPEGGNAAGSGGRPGSLYIKIKVAEDSIFIRDGADIYVDSNISFTQAILGGKVEVPTLSGKMQLKIPKGVQHGQLLVLRGKGLPKHGFLVHHGDQYVRFRLNFPM 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2470 403 ProSiteProfiles Zinc finger CR-type profile. 206 280 IPR001305 GO:0031072|GO:0051082
Ssu6g2470 403 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 206 277 IPR036410 -
Ssu6g2470 403 Pfam DnaJ central domain 219 275 IPR001305 GO:0031072|GO:0051082
Ssu6g2470 403 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 29 403 - -
Ssu6g2470 403 PRINTS DnaJ domain signature 81 99 IPR001623 -
Ssu6g2470 403 PRINTS DnaJ domain signature 116 136 IPR001623 -
Ssu6g2470 403 PRINTS DnaJ domain signature 99 114 IPR001623 -
Ssu6g2470 403 Hamap Chaperone protein DnaJ [dnaJ]. 76 403 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Ssu6g2470 403 ProSiteProfiles dnaJ domain profile. 79 144 IPR001623 -
Ssu6g2470 403 Pfam DnaJ C terminal domain 192 402 IPR002939 -
Ssu6g2470 403 PANTHER CHAPERONE PROTEIN DNAJ 1, MITOCHONDRIAL 29 403 - -
Ssu6g2470 403 Gene3D DnaJ domain 76 189 IPR036869 -
Ssu6g2470 403 SUPERFAMILY HSP40/DnaJ peptide-binding domain 191 322 IPR008971 GO:0006457|GO:0051082
Ssu6g2470 403 Gene3D - 249 283 - -
Ssu6g2470 403 Gene3D - 215 248 - -
Ssu6g2470 403 CDD DnaJ 79 133 IPR001623 -
Ssu6g2470 403 SUPERFAMILY HSP40/DnaJ peptide-binding domain 327 402 IPR008971 GO:0006457|GO:0051082
Ssu6g2470 403 SMART dnaj_3 78 136 IPR001623 -
Ssu6g2470 403 Pfam DnaJ domain 79 141 IPR001623 -
Ssu6g2470 403 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Ssu6g2470 403 CDD DnaJ_C 190 402 - -
Ssu6g2470 403 Gene3D - 190 320 - -
Ssu6g2470 403 Gene3D - 322 402 - -
Ssu6g2470 403 SUPERFAMILY Chaperone J-domain 76 174 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2470 Ssu-Chr6 58163661 58175719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2470 79 174 Miscellaneous Gene Families AT1G16680 31.373 7.15e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2470 - - gmx:100809440 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2470 6 58163661 58175719 Ssu6g2470 6 58163661 58175719 ECH