Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2439 ATGGATTCTCTAGACACAACTAAGAAGCCCCATGCCGTGTGCGTCCCATTCCCTGCACAAGGCCACATAAACCCAATGCTAAAACTGGCAAAACTCCTTCACTTCAAAGGCTTTCACATCACCTTTGTCAACACTGAGTATAACCACAAACGCCTTCTCAAAGCCAGAGGCCCTGATTCCCTTGATGGTCTCCCTTCATTTCGCTTTGAAACCATCCCTGATGGTCTACCCGAGCCTGATGTGGATGACACACAGGATATACCTTCCCTGTGTGACTCCACCAGAAGAACTTGCTCCCCTCACTTCAAAAACCTCCTTGGAAAAATCAATAATTCAGATGCCCCTCCAGTGACTTGCATAGTTTCTGACGGTGCTATGAGCTTCACTCTTGAAGCTGCAGAGGAATTGGGTGTCCCAGAGGTGCTGTTTTGGACCACTAGTGCTTGTGGGTTCATGTGTTATGTGCAATATGAACAACTCATTGAAAAGGACCTAACACCACTCaaagACTCAAGTTATGTCACAAATGGGTATTTGGAGACTACCGTGGATTGGGTACCGGGCATCAAGGATATTCGATTAAGGGATATTCCCAGTTTCATTAGGACCACGGATTCGGATGATCTTATGGTTGATTTCATACGGCAGGAGTGCGGGAGGGCTCGAAGAGCTTCTGCAATCATTTTGAACACATTTGATGCCTTAGAGCATGACGTCTTGGAAGCGTTCTCGTCAATTTTGCCTCCTGTTTATTCCATAGGTCCTTTGAATTTGCTCGTGAAGGATGTTAATGATAAGGCCTTGAACGCAATTGGGTCCAATCTTTGGAAGGAGGAGCCCGAGTGCGTGGAGTGGCTCGACACTAAAGAGCCCAACAGTGTTGTTTACGTAAATTTTGGGAGCATTACAGTTATGACAAGTGAGCAGTTGATTGAGTTTGCATGGGGGCTTGCAAACAGCAACAAAAGCTTTTTGTGGGTCATAAGACCAGATCTTGTGGCGGGTGAAAACGCTGTTCTGCCTCCGGAGTTTGTGAAACAGACCAAAAACAGAGGCCTGTTGTCTAGTTGGTGCCCCCAAGAGCAGGTTTTGACTCACCCCGCGATTGGGGGGTTTTTGACACATAGTGGTTGGAATTCTACCTTAGAAAGTGTGTGTGGAGGTGTTCCAATGATATGTTGGCCTTTCTTTGCGGAGCAACAAACCAATTGTCGGTTCTGTTGCAAGGAGTGGGGGATTGGGATGGAGATTGAAGATGTTAAGAGGGACAAAATAGAGAGCCTTGTGAGGGAGTTGATGGATGGGGAAAAGGGTAAAGAGATGAAGGAGAAAGCTTTGCAATGGAAGGAATTGGGAAAACATGCTGCTTCTGGCCCCAGTGGATCTTCGTTTCTTAATTTGGACAACATGGTTCGTGAAGTTCTTTTGGGGAAAAGTGTTAAAAATTAG 1449 0.4603 MDSLDTTKKPHAVCVPFPAQGHINPMLKLAKLLHFKGFHITFVNTEYNHKRLLKARGPDSLDGLPSFRFETIPDGLPEPDVDDTQDIPSLCDSTRRTCSPHFKNLLGKINNSDAPPVTCIVSDGAMSFTLEAAEELGVPEVLFWTTSACGFMCYVQYEQLIEKDLTPLKDSSYVTNGYLETTVDWVPGIKDIRLRDIPSFIRTTDSDDLMVDFIRQECGRARRASAIILNTFDALEHDVLEAFSSILPPVYSIGPLNLLVKDVNDKALNAIGSNLWKEEPECVEWLDTKEPNSVVYVNFGSITVMTSEQLIEFAWGLANSNKSFLWVIRPDLVAGENAVLPPEFVKQTKNRGLLSSWCPQEQVLTHPAIGGFLTHSGWNSTLESVCGGVPMICWPFFAEQQTNCRFCCKEWGIGMEIEDVKRDKIESLVRELMDGEKGKEMKEKALQWKELGKHAASGPSGSSFLNLDNMVREVLLGKSVKN 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2439 482 Gene3D Glycogen Phosphorylase B; 277 454 - -
Ssu6g2439 482 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 9 471 - -
Ssu6g2439 482 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 58 475 - -
Ssu6g2439 482 CDD GT1_Gtf-like 10 452 IPR002213 GO:0008194
Ssu6g2439 482 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 209 440 IPR002213 GO:0008194
Ssu6g2439 482 Gene3D Glycogen Phosphorylase B; 11 457 - -
Ssu6g2439 482 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 6 56 - -
Ssu6g2439 482 ProSitePatterns UDP-glycosyltransferases signature. 357 400 IPR035595 -
Ssu6g2439 482 PANTHER GLYCOSYLTRANSFERASE 58 475 - -
Ssu6g2439 482 PANTHER GLYCOSYLTRANSFERASE 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2439 Ssu-Chr6 57352896 57396784 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2439 8 478 Glycosyltransferase AT1G22380 64.000 0.0 660
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2439 - - gmx:100784251 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2439 6 57352896 57396784 Ssu6g2439 6 57352896 57396784 ECH