Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2438 ATGCAACCCAAGGAGGAGATAACAAACATGGGTTCTTTGGGCATAATCAAGAAGCCCCATGCCGTGTGCATACCGCACCCAACCCAAGGTCACATAAACCCTATGCTAAAACTAGCAAAACTCCTTCACTTCAAAGGCTTTCACATCACCTTTGTTAACAGTGAGTATAACCACAAACGCCTTCTCAAAACCAGAGGCCCTGATTCCCTTAATGGTCTCCCTTCATTTCGCTTCGAAACCATTCCTGATGGTCTACCCGAGCCCGATGTGGATGCCACACAGGATATACCTTCCCTTTGTGACTCAACTAGAAGAACTTGTTTGCCTCACTTCAGGAACCTCCTCACTGAAATCAATAATTCAGATGCCCCTCCAGTGACTTGCATAGTTTCTGACGGTGTCATGAGCTTCGCTCTTGATGCTGCTGAAGAATTGGGCGTCCCAGGGGTGCTGTTATGGACCCCTAGTGCGTGCGGGTTCATGTGCTACGTCCAATTTGAACAACTCATTGAAAAGGGCCTAATACCCCTCaaagACTCGAGTTACCTCACGAATGGTTATTTGGAGACTACCATCGATTGGATACCGGGTATCAAGGAAATTCGATTGAGGGATATTCCTAGTTTCATTAGGACCACAGATTCGGATGATTTTATGCTTGAATTCTTACGGTGGGAGTGCGGGAGGGCGCGAAGAGCTTCTGCAATCATTCTGAACACGTTTGATGCCTTAGAGCATGACGTGTTGGAAGCGTTCTCGTCCATTTTGCCTCCTGTTTATTCCGTTGGTCCTTTGAATTTACTCTTGAAGGACATCGATGACAAGGATTTGAGCGCAATTGAGTCCAATCTTTGGAAGGAGGAGCCCGAGTGCGTGGAGTGGCTTGACACCAAAGAGCCCAACAGTGTTGTTTACGTGAATTTTGGAAGCATCACGGTTATGACAAGTGAGCAATTGATCGAGTTCGCATGGGGACTTGCAAATAGCAACAAAAGCTTTTTGTGGGTCATAAGACCAGATCTTGTGGCGGGTGAAAACGCTGTTCTGCCTCGGAAGTTTGTGAAACAGACCAAAAACAGAGGCCTTATGTCTAGTTGGTGTCCCCAAGAGCAGGCTTTGACTCACCCCGCGATTGGGGGGTTTTTGACACACAGTGGTTGGAATTCGACGTTGGAAAGTGTGTGTGGAGGTGTTCCGATGATATGTTGGCCTTTCTTTGCGGAGCAGCAGACCAATTGTCGGTTCTGTTGCAAGGAGTGGGGGATTGGGTTGGAGATTGAAGATGTTAAGAGGGACAAAATAGAGAGCCTTGTGAGAGAGTTGATGGATGGTGAAAAGGGTAAGGAGATGAAGGAGAAAGCTTTGCAATGGAAGGAATTGGCAAAAAGCGCTGCTTCTGGCCCTCATGGATCTTCGTTTCTTAATTTGGAGAATATGGTTCGTCAAGTTTTTGTGGGCAAAATTGTTGAAAAGAGTAATGAtacatga 1488 0.463 MQPKEEITNMGSLGIIKKPHAVCIPHPTQGHINPMLKLAKLLHFKGFHITFVNSEYNHKRLLKTRGPDSLNGLPSFRFETIPDGLPEPDVDATQDIPSLCDSTRRTCLPHFRNLLTEINNSDAPPVTCIVSDGVMSFALDAAEELGVPGVLLWTPSACGFMCYVQFEQLIEKGLIPLKDSSYLTNGYLETTIDWIPGIKEIRLRDIPSFIRTTDSDDFMLEFLRWECGRARRASAIILNTFDALEHDVLEAFSSILPPVYSVGPLNLLLKDIDDKDLSAIESNLWKEEPECVEWLDTKEPNSVVYVNFGSITVMTSEQLIEFAWGLANSNKSFLWVIRPDLVAGENAVLPRKFVKQTKNRGLMSSWCPQEQALTHPAIGGFLTHSGWNSTLESVCGGVPMICWPFFAEQQTNCRFCCKEWGIGLEIEDVKRDKIESLVRELMDGEKGKEMKEKALQWKELAKSAASGPHGSSFLNLENMVRQVFVGKIVEKSNDT 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2438 495 CDD GT1_Gtf-like 19 469 IPR002213 GO:0008194
Ssu6g2438 495 Gene3D Glycogen Phosphorylase B; 286 463 - -
Ssu6g2438 495 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 239 449 IPR002213 GO:0008194
Ssu6g2438 495 PANTHER GLYCOSYLTRANSFERASE 14 65 - -
Ssu6g2438 495 PANTHER GLYCOSYLTRANSFERASE 67 484 - -
Ssu6g2438 495 ProSitePatterns UDP-glycosyltransferases signature. 366 409 IPR035595 -
Ssu6g2438 495 Gene3D Glycogen Phosphorylase B; 20 466 - -
Ssu6g2438 495 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 14 65 - -
Ssu6g2438 495 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 67 484 - -
Ssu6g2438 495 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 18 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2438 Ssu-Chr6 57334587 57336246 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2438 17 488 Glycosyltransferase AT1G22380 63.025 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2438 - - gmx:100805279 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2438 6 57334587 57336246 Ssu6g2438 6 57334587 57336246 ECH