Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2424 ATGTGTCTGAGGTCTCGTCGGCTTACCGTCGATTACCTGTGGCTGGATTTGAAGAAGCGGACCTCAGGAAAGTTTGAGATAATCAACTTGGACTATGAGTTCGAGGCTGACTTTAGGAGTTTTGAGGAGCTACCAAACAACTATGTAGCAGTTTCGGTGCTTAGAAGCCGTAAACAGAGAAAGCGCAGAGCCACCAAAATGGCCGTTGGGGGATTCGCCGTGGATGCTCCCGCCAATGGCTTCGGCGGCAAAATAACACTCTCAGTTGTCATCACTTGCATCGTTGCTGCATCCAGTGGTCTAATTTTTGGGTATGACATCGGAATTACAGGAGGTGTCACTACGATGAAACCATTTCTTAGAAAATTCTTCCCAGCAATATTGAGAAAGTCTGCTAGAGCTGAAACAAACGTGTATTGTGTGTATGACAATCagttgttaacattatttacgTCCTCCCTTCATCTTGCGGGGCTAGTTTCGTCTCTCTTGGCCAGCCGCGTCACGACGGCGTTGGGTCGGAGAAACACCATGATCTTCGGTGGTTGCATCTTTTTTGCCGGTGGTGCCATTAACGGTGCTGCTGAAAATATTGCTATGCTCATCTTGGGTCGCATCTTGCTCGGCCTTGGGGTCGGTTTCACTAATCAAGCCACGCCAGTGTATCTTTCGGAAATCGCTCCACCCAAATGGCGAGGCGCGTTCAACACGGGCTTCCAATTCTTCATCGGAGTCGGCGTGGTGGCTGCCAATTGCATAAACTACGGCACAGCGAGGCTCACGTGGGGGTGGCGCGTTTCCCTCGGCCTTGCCACGGTCCCCGCAATCATGATGACAATCGGCGCCTTCCTAATCCCCGACACTCCAAGCAGCCTAGTGGAGCGCGGCCAAATAGACAAAGCAAGAAACGCCCTGCGCAAAGTGAGGGGTCCCACTGTCGACGTGGAACCCGAATTGGAGCAAGTTGTTAAGTTGTCGCAGGTTTCCAAAGCCATGGAGCAGGAGAGTTTTTTGACCATATTTGAGAAGCAGTATCGACCTCAGTTGGTGATGGCGTTTGCTATCCCCTTGTCTCAGCAGCTTACGGGGATCAACATTGTCGCTTTCTATGCGCCCAACTTGTTTCAGTCTGTGGGATTTGGCAATGACTCGGCTTTGCTTTCGGCCGTTATACTGGGACTCGTCAACCTTGCTTCAATTCTTGTCTCAACCGCTGTTGTTGATCGCTTTGGTAGAAGATTCTTGTTCATAGTGGGTGGCATTCAAATGCTTGTCTgcatgttgcctttccaagcaaataCCGAAGGTTTCTACCAATTTCctagagaaatggttaaggggttctctcaaagtgtccgttgtgagtgccTTTTAAAGACACCCTTCGTCTGGCATTGTGAAAGGAGGAAaatagtcgttggagcattaaatgcttttcaccaactggtcactctgataagataa 1464 0.4522 MCLRSRRLTVDYLWLDLKKRTSGKFEIINLDYEFEADFRSFEELPNNYVAVSVLRSRKQRKRRATKMAVGGFAVDAPANGFGGKITLSVVITCIVAASSGLIFGYDIGITGGVTTMKPFLRKFFPAILRKSARAETNVYCVYDNQLLTLFTSSLHLAGLVSSLLASRVTTALGRRNTMIFGGCIFFAGGAINGAAENIAMLILGRILLGLGVGFTNQATPVYLSEIAPPKWRGAFNTGFQFFIGVGVVAANCINYGTARLTWGWRVSLGLATVPAIMMTIGAFLIPDTPSSLVERGQIDKARNALRKVRGPTVDVEPELEQVVKLSQVSKAMEQESFLTIFEKQYRPQLVMAFAIPLSQQLTGINIVAFYAPNLFQSVGFGNDSALLSAVILGLVNLASILVSTAVVDRFGRRFLFIVGGIQMLVCMLPFQANTEGFYQFPREMVKGFSQSVRCECLLKTPFVWHCERRKIVVGALNAFHQLVTLIR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2424 487 TIGRFAM SP: MFS transporter, sugar porter (SP) family 88 428 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu6g2424 487 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 69 429 IPR045262 GO:0015144
Ssu6g2424 487 Gene3D MFS general substrate transporter like domains 81 445 IPR036259 -
Ssu6g2424 487 SUPERFAMILY MFS general substrate transporter 93 432 IPR036259 -
Ssu6g2424 487 ProSiteProfiles Major facilitator superfamily (MFS) profile. 92 487 IPR020846 GO:0022857
Ssu6g2424 487 Pfam Sugar (and other) transporter 93 430 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu6g2424 487 CDD MFS_STP 95 428 IPR044778 GO:0015145|GO:0015749
Ssu6g2424 487 ProSitePatterns Sugar transport proteins signature 2. 207 232 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu6g2424 487 PRINTS Sugar transporter signature 359 369 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu6g2424 487 PRINTS Sugar transporter signature 100 110 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu6g2424 487 PRINTS Sugar transporter signature 202 221 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu6g2424 487 PANTHER SUGAR TRANSPORTER 69 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2424 Ssu-Chr6 56806594 56828547 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2424 116 464 Organic Solute Cotransporters AT1G34580 58.172 2.81e-135 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2424 K24193 - gmx:100783916 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2424 6 56806594 56828547 Ssu6g2424 6 56806594 56828547 ECH