Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2410 ATGATGACTAGCTGTATCAACCTCAAAATGTGTCTTCTTAACTTGGTTACCTTGTTTAGTATGCTTTCCTTGTCCCATGGAAGACCAAATGCCGAGTGTCGAGTGAGAGCAGTTAATCTGGGTGGTTGGCTCGTTACTGAAGGTTGGATCAAACCTTCCCTCTTCGATGGCATTCCAAATAAAGACTTCTTGGATGGAACTCGTCTTCAGTTCAAGTCCGTGACAACACGAAAATATCTTTGTGCGGAGTCCGGAGGAGGAACCATCATAGTTGCAAATCGCACAGCTGCTTCGGGTTGGGAAACATTTTCATTATGGAGGCTAAACGAGAATACTTTCAGATTCAGAGTGTTCAACAAACAGTTTGTGGGGTTAGATGGGATTACCGTCGTTGCTGTTTCCAATATTTCCACTGATTCTTTGACATTTAATGTTGTAAAGGAAAGTGGTAATTCCAGCCGTGTTCGAATCAAAGCTTCCAATGGATACTTCCTGCAGGCGAAGACGGAGGAATTGGTGACTGCTGATGTTTCAGAGGTCAACGGATGGGGAGATGATGACCCGTCTGTTTTTGTAATGACAATAGCTGGAAGGATGCAAGGCGAATTCCAAGTAACAAATGGTTATGGGCCTACAAAAGCTCCCCAAGTTATGCAGGAACATTGGAGCACTTTTATTGTTGAAGATGATTTCAAGTTCATAGCCAGTAATGGACTGAATGCTGTTAGAATTCCAATTGGCTGGTGGATGGCAAGTGATCCAACGCCAACCCCACCATATGTTGGGGGTTCCTTGGATGCACTAGACAATGCCTTTTTGTGGGCACAGAAATATGGACTGAAAATCATCATTGATCTTCATGCTGCACCCGGTTCTCAAAATGGTTTTGAACACAGCTCTTCAAGAGATGGTTCACAAGAATGGGGAAAAACAGATGAGACCATTCAACAAACAGTCCAAGTTATAGACTTCCTAGCCGCAAGGTATGCAAAAAGCCCAAGCCTATATGCAGTTGAACTAATAAACGAGCCTCTCTCCCCTGGTGCGACACTAGAGAGCTTGACCAATTACTATAAGGCTGGTTATGAAGCAGTGCGCAAGCACTCTTCCACAGCTTATGTGGTGTTATCAAACAGGATAGGACCCTCAAATCCCAGGGAACTCTTCCCTCTTGCAAATGGCCGTATGCGATCTGTGATTGATGTTCACTACTACAACCTCTTTCAAGATGTATTTAATGATATGACTGTCCAACAGAACATTGATTTCATCTACAACAACCGCTCATCACAGTTGAGTTTTGTTACAACCTCAAATGGACCTCTTACTTTTGTTGGTGAATGGGTTGCTGAATGGCAAGTTCAGGGAGCTACAAAAGAAGATTATCAAAGATTTGCCAGAGCTCAATTAGATGTTTATGGGCGAGCAACATTTGGGTGGGCTTATTGGGCTTTCAAAAACGTAAACAATCACTGGAGTTTGGAGTGGATGATCAAGAATGGTTATATCAAGCTGTAG 1518 0.4315 MMTSCINLKMCLLNLVTLFSMLSLSHGRPNAECRVRAVNLGGWLVTEGWIKPSLFDGIPNKDFLDGTRLQFKSVTTRKYLCAESGGGTIIVANRTAASGWETFSLWRLNENTFRFRVFNKQFVGLDGITVVAVSNISTDSLTFNVVKESGNSSRVRIKASNGYFLQAKTEELVTADVSEVNGWGDDDPSVFVMTIAGRMQGEFQVTNGYGPTKAPQVMQEHWSTFIVEDDFKFIASNGLNAVRIPIGWWMASDPTPTPPYVGGSLDALDNAFLWAQKYGLKIIIDLHAAPGSQNGFEHSSSRDGSQEWGKTDETIQQTVQVIDFLAARYAKSPSLYAVELINEPLSPGATLESLTNYYKAGYEAVRKHSSTAYVVLSNRIGPSNPRELFPLANGRMRSVIDVHYYNLFQDVFNDMTVQQNIDFIYNNRSSQLSFVTTSNGPLTFVGEWVAEWQVQGATKEDYQRFARAQLDVYGRATFGWAYWAFKNVNNHWSLEWMIKNGYIKL 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2410 505 SUPERFAMILY (Trans)glycosidases 34 503 IPR017853 -
Ssu6g2410 505 Gene3D Glycosidases 186 505 - -
Ssu6g2410 505 PANTHER PUTATIVE-RELATED 8 505 - -
Ssu6g2410 505 SUPERFAMILY Actin-crosslinking proteins 68 183 IPR008999 -
Ssu6g2410 505 Pfam Cellulase (glycosyl hydrolase family 5) 218 487 IPR001547 GO:0004553|GO:0071704
Ssu6g2410 505 Gene3D - 46 185 - -
Ssu6g2410 505 PANTHER FASCIN 8 505 IPR010431 GO:0007015|GO:0051015
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2410 Ssu-Chr6 56349221 56353037 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2410 - - gmx:100790619 943.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2410 6 56349221 56353037 Ssu6g2410 6 56349221 56353037 ECH