Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2403 atgGCGATTGGCCTTCTTCTTTGGTTGTTACTGGCCAAGGGTCTTGCCTTGGAGGGTACTATGGGGGTCACATTTTCTTCTAGGCTCGTTCACCGGTTCTCTGAGGAGGCTAAGGTTCATTTGGCTTCAAGGGGCAACGGTTCTGTGCTTCAATCGTGGCCTAAGAGGAACAGCTCTGACTATTTCAGGTTGCTTCTTAGAAGTGACGTGACACGGCAGAGGATGAGGCTTGGTTCACAGTATCAGTCTCTGTACCTTTCTGAAGGAAGCCAGACCTTCTTCTTTGGCAATGTGCTTTATTGGTTGCATTACACATGGATTGATATAGGGAATCCAAGTGTTTCATTTCTTGTTGCATTGGATGCTGGAAGTGACATGCTTTGGGTTCCCTGTGACTGCATTGAATGTGCTTCCTTGTCTGCCGGTCATTACAATGTGTTGGACAGGGATTTGAATCAGTATAGACCATCATTGTCCAGCACCAGCAGGCATCTACCTTGTGGTCATCAGTTGTGTTATCTAAATTCTAGTTGCAAAGGTTCTAAGGATCCTTGCACTTATTCTGTTCCGTACTTCTCAAATGATACCTCAAGTTCTGGATATCTTTTTGAAGACAAACTACATTTGGTATCTAATGGAGGACATACCGTACAAAATTCTGTGCAAGCCTCTATTGTTTTAGGTTGTGGAAGGAAACAAACTGGTGACTTTTTAAAAGGAGCTGCTCCTGATGGTCTTCTAGGGCTAGGACCCAGAAAAATTTCAGTCCCGAGTTTGCTGGCAAAGGCAGGACTTATTCAgaattctttttcaatttgtttcgATGAGAATGAATCTGGGAGGATTATCTTTGGCGACCAAGGTCATGTCACCCAACATTCTACATCATTCTTGCCCATAGATGGGGAATTTAGTACCTATATAGTTGGAGTAGAGAGTTTTTGTGTTGGCAGCTTATGTCTCAAGGAAACTAGATTTGAAGCACTTATTGACAGTGGAGCTTCTTTCACATTTCTTCCCAATGAAGTTTATCAAAAAGTTGTAACAGAGTTTGAGAAACAAGTAAATGCAACCAGGATTATTCTTCAACAACCATCATGGGAGTACTGCTATAATGCCAGTTCACAGGAGTTGATTAACATTCCCCCATTGAAACTCACCTTCTCTAggaatcaaacttttttaattcaaaatcctATACTTATTGATCCTGCTAGTCAGGAACAGGAATACACCGTCTTTTGTTTGCCTGTAAGTCAGACTGATGACGACTATGCTACCATTGGACAGAAATTTCTGATGGGTTATCGCATGGTCTTTGATAGGGAGAATCTACGGTTTGGCTGGTCTAGATGGAATTGTCAAGATTCAGCAAGTTTCACATCACCTTCCGGTGGTGGATCACCAAACCCTTTACCAGCCAATCAGCAGCAGAGTGTCCCTAATGCTCGTGGGGTACCGCCTGCGGTTGCCGGACATGCGTCCCCCAAACCCTCTGCAGCCACACCTGGACTTACCTCTAGGCATTCCTTAGTTTCATTGTTACTGATATGTTGTCACCTTTGGCTTTGGCTATGTGGTTAA 1584 0.4249 MAIGLLLWLLLAKGLALEGTMGVTFSSRLVHRFSEEAKVHLASRGNGSVLQSWPKRNSSDYFRLLLRSDVTRQRMRLGSQYQSLYLSEGSQTFFFGNVLYWLHYTWIDIGNPSVSFLVALDAGSDMLWVPCDCIECASLSAGHYNVLDRDLNQYRPSLSSTSRHLPCGHQLCYLNSSCKGSKDPCTYSVPYFSNDTSSSGYLFEDKLHLVSNGGHTVQNSVQASIVLGCGRKQTGDFLKGAAPDGLLGLGPRKISVPSLLAKAGLIQNSFSICFDENESGRIIFGDQGHVTQHSTSFLPIDGEFSTYIVGVESFCVGSLCLKETRFEALIDSGASFTFLPNEVYQKVVTEFEKQVNATRIILQQPSWEYCYNASSQELINIPPLKLTFSRNQTFLIQNPILIDPASQEQEYTVFCLPVSQTDDDYATIGQKFLMGYRMVFDRENLRFGWSRWNCQDSASFTSPSGGGSPNPLPANQQQSVPNARGVPPAVAGHASPKPSAATPGLTSRHSLVSLLLICCHLWLWLCG 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2403 527 PANTHER ASPARTYL PROTEASES 7 476 IPR001461 GO:0004190|GO:0006508
Ssu6g2403 527 Gene3D Acid Proteases 97 286 IPR021109 -
Ssu6g2403 527 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 328 339 IPR001969 GO:0004190|GO:0006508
Ssu6g2403 527 MobiDBLite consensus disorder prediction 460 502 - -
Ssu6g2403 527 MobiDBLite consensus disorder prediction 460 483 - -
Ssu6g2403 527 Pfam Xylanase inhibitor N-terminal 104 286 IPR032861 -
Ssu6g2403 527 Gene3D Acid Proteases 287 462 IPR021109 -
Ssu6g2403 527 CDD pepsin_like 107 451 IPR034164 -
Ssu6g2403 527 Pfam Xylanase inhibitor C-terminal 324 450 IPR032799 -
Ssu6g2403 527 SUPERFAMILY Acid proteases 98 457 IPR021109 -
Ssu6g2403 527 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 7 476 - -
Ssu6g2403 527 PRINTS Pepsin (A1) aspartic protease family signature 426 441 IPR001461 GO:0004190|GO:0006508
Ssu6g2403 527 PRINTS Pepsin (A1) aspartic protease family signature 109 129 IPR001461 GO:0004190|GO:0006508
Ssu6g2403 527 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Ssu6g2403 527 ProSiteProfiles Peptidase family A1 domain profile. 103 450 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2403 Ssu-Chr6 55965166 55970461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2403 96 455 Miscellaneous Gene Families AT1G44130 24.147 2.03e-20 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2403 - - lang:109359439 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2403 6 55965166 55970461 Ssu6g2403 6 55965166 55970461 ECH