Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2401 ATGGGTGCTTTTTTTAGTATGGCTAATACCAAGACCAATCAAAGCGAGTCTAATGAAATCTCTTCAAATGAGACCTGTAAGAGGCAAAGAATGTCACCTGCCTCTGTTGAAGAAAGTCCAAGGCTTATTCCTAATCTCCCTGATGAGTTATCCCTTCAGATTATTGCTCGACTTCCTAGGATTTGTTACTATCATGTAAGGCTGGTGTCTAGGAGGTGGAAAGCAACTATCATGAGTTCAGAATTATATAAAGTAAGAAAAGAGCTTGGAACAACTGAAGAGTGGCTATATTTGTTGGTTAGGGTTGGAGAAAATAAACTCTTATGGCATGCTCTAGACCCCTGTTCTCGTATATGGCAGAGGCTACCTATTATGCCCAGCATTGTCGATGAAGAAAAATCCCAAAAGGGTTCTTCTAGGCTTTGGATGTGGAACATGGTAGAAGGTATCAGAATTGCTGAAATTATTAGAGGTCTGCTTGGACAGAAGGATGCTTTGGATGACATGCCTTTTTGCGGTTGTGCCTTTGGAGCTGTTGATGGATGTCTTTACGTTCTAGGTGGATTCTCTAAAGCTTCAACCATGAAATGTGTCTGGCGATTTGATCCGATACAAAATGCGTGGAAGAAGGTGAATTCTATGTCTACAGGTAGGGCATATTGTAAGACAGGCATCTTAAATGACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTCAAGCTGGACTGATTCCTCTTCAGTCTGCTGAAGTTTTTGACCCCTTCACGGATACATGGTCCCATGTACCTAGTATGCCGTTCTCGAGAGCTGGAGTCCTGCCCACAACTTTTTTGGCTGACATGTTAAAGCCTATTGCCACTGGCTTAACCTCATACAAGGGAAGGTTGTATGTTCCACAAAGCTTGTATTCATGGCCCTTTTTTGTTGATGTTGGTGGAGAAATATATGACCCTGAAACAAATTCATGGATGGAAATGCCAAATGGAATGGGGGAGGGGTGGCCCATTAAGCAGGCAGGAACAAAATTGAGTGTTGTAATGAATGGTGAATTATATGCCTTTGATCCTTCTAACTCTGTGGACAGTGGAAGGATCAAGGTATATGATCAAGGAGAGGATGCATGGAAAGTTGTTTTTGGAAAAGTTCCTGTATATGATTTTACCGATTCGGAATCTCCATATCTACTAGCTGGTTTCCATGGAAAGCTTCATTTCATCTCAAAAGATGCCAATCAGGATGTTGCTGTTCTGCAGGCTGATGTGTGCAGTAATTTGGATTCTTCACCATCAACCTCAACACCCCTATCCCCCAAATCCATGCATGATGGATTACTTCCAGAATTGGCCACCGAAACAGATGCAGTTGTTTGGAAAGTAGTTGCTAGTAGGGGTTTTGGGCAGGCTGAACTGATCAATTGCCAAGTTATTGATATCTAG 1437 0.4224 MGAFFSMANTKTNQSESNEISSNETCKRQRMSPASVEESPRLIPNLPDELSLQIIARLPRICYYHVRLVSRRWKATIMSSELYKVRKELGTTEEWLYLLVRVGENKLLWHALDPCSRIWQRLPIMPSIVDEEKSQKGSSRLWMWNMVEGIRIAEIIRGLLGQKDALDDMPFCGCAFGAVDGCLYVLGGFSKASTMKCVWRFDPIQNAWKKVNSMSTGRAYCKTGILNDKLYVVGGVSQGQAGLIPLQSAEVFDPFTDTWSHVPSMPFSRAGVLPTTFLADMLKPIATGLTSYKGRLYVPQSLYSWPFFVDVGGEIYDPETNSWMEMPNGMGEGWPIKQAGTKLSVVMNGELYAFDPSNSVDSGRIKVYDQGEDAWKVVFGKVPVYDFTDSESPYLLAGFHGKLHFISKDANQDVAVLQADVCSNLDSSPSTSTPLSPKSMHDGLLPELATETDAVVWKVVASRGFGQAELINCQVIDI 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2401 478 MobiDBLite consensus disorder prediction 1 40 - -
Ssu6g2401 478 SUPERFAMILY Kelch motif 97 384 IPR015915 GO:0005515
Ssu6g2401 478 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Ssu6g2401 478 Pfam Kelch motif 218 266 IPR006652 GO:0005515
Ssu6g2401 478 Pfam Kelch motif 170 215 IPR006652 GO:0005515
Ssu6g2401 478 Pfam F-box-like 43 84 IPR001810 GO:0005515
Ssu6g2401 478 SMART fbox_2 46 86 IPR001810 GO:0005515
Ssu6g2401 478 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g2401 478 Gene3D - 109 385 IPR015915 GO:0005515
Ssu6g2401 478 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 478 - -
Ssu6g2401 478 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 478 - -
Ssu6g2401 478 SMART kelc_smart 229 279 IPR006652 GO:0005515
Ssu6g2401 478 SMART kelc_smart 182 228 IPR006652 GO:0005515
Ssu6g2401 478 SUPERFAMILY F-box domain 39 85 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2401 Ssu-Chr6 55860931 55862367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2401 37 264 Miscellaneous Gene Families AT4G33900 25.000 7.31e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2401 - - gmx:100815614 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2401 6 55860931 55862367 Ssu6g2401 6 55860931 55862367 ECH