Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2397 ATGGAGAGCCTGCAGAGTGGTTATTTGTTTCCTGAGGTATTCGTGCGAGAATCTGAATATGCTCAGAGGAATCCCCATGCAAGATTGATAAGACTTGGAATTGGTGATACTACAGAGCCAATACCAGACATCATAACTTCAGCTATGGCTGAGCAAGCATTGGCTCTATCAACAGCTCAAGGCTATAAGGGTTATGGACCTGAGCAAGGCAACAGGGAGCTAAAAAGGGCAATAGCAGAAACATTTTACCAAGATATGCAAGTGACGGAAAATGAGATTTTTGTATCTGATGGTGCACAGTGTGATATTTCTCGCGTTCAGATGCTTCTGGATGCTAGTTTGTCAATAGCTGTGCAGGATCCAACTTTTCCGGCATACATAGATTCCAGTGTGATTGTTGGTAGGGCTGGCAGGTTTAAAGCACAGACCGGGAAGTACAAAAACATTGTGTACATGAAGTGTGGATCTGAGAATAATTTCTTTCCAGACCTATCAAATACTCCAAGGACtgatttgattttcttttgttctcCAAACAATCCAACTGGTAGTGCCGCATCTCGGCAGCAACTAGAGCAACTTGTGGAGTTTGCAAAAGCAAATGGGTCTATCATCATTTATGACGCTGCTTATGCTGCTTACATATCAGATGAAAGCCCACGATCAATTTTCGAAATTCCTGGAGCAAAAGAGGTGGTGGCAATTgaaatttcatcattttccaAATTTGCTGGTTTTACTGGTGTCCGCCTTGGCTGGACAGTTGTCCCTAAAGAGTTGTTGTACGCTAATGGTTATCCTATCATAAAGGATTATGATCGCATTGTTTGCACCTGTTTCAATGGTGCATCTAATATTGTTCAAGCTGGTGGACTTGCATGCCTTTCTCCAGAAGGATTTCAGGCACTGAAAACAACCATGCGCTACTACATGGAAAATGCGAAAATTCTTGTTGACACGTTTCAATCACTTGGTCTAAAGGTATATGGCGGCAAAAATGGGCCTTATGTGTGGGTACATTTTCCAGGGTTGAGTTCATGGGATGTGTTCAACAAAATTCTTGAGAGAGCAGCCATAGTCACTGTACCGGGCATAGGATTTGGTCCTGGCGGCGAGGGGTATATTAGAGTCAGTGCCTTCGGTCACAGAGAAAGTGTACTGGAAGCTTCAAGCAGATTGAGAAAACTactataa 1194 0.4179 MESLQSGYLFPEVFVRESEYAQRNPHARLIRLGIGDTTEPIPDIITSAMAEQALALSTAQGYKGYGPEQGNRELKRAIAETFYQDMQVTENEIFVSDGAQCDISRVQMLLDASLSIAVQDPTFPAYIDSSVIVGRAGRFKAQTGKYKNIVYMKCGSENNFFPDLSNTPRTDLIFFCSPNNPTGSAASRQQLEQLVEFAKANGSIIIYDAAYAAYISDESPRSIFEIPGAKEVVAIEISSFSKFAGFTGVRLGWTVVPKELLYANGYPIIKDYDRIVCTCFNGASNIVQAGGLACLSPEGFQALKTTMRYYMENAKILVDTFQSLGLKVYGGKNGPYVWVHFPGLSSWDVFNKILERAAIVTVPGIGFGPGGEGYIRVSAFGHRESVLEASSRLRKLL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2397 397 Gene3D Aspartate Aminotransferase, domain 1 9 393 IPR015422 GO:0003824
Ssu6g2397 397 PANTHER AMINOTRANSFERASE 1 397 IPR019942 GO:0008483
Ssu6g2397 397 PANTHER LL-DIAMINOPIMELATE AMINOTRANSFERASE, CHLOROPLASTIC-RELATED 1 397 - -
Ssu6g2397 397 SUPERFAMILY PLP-dependent transferases 8 393 IPR015424 -
Ssu6g2397 397 Pfam Aminotransferase class I and II 29 386 IPR004839 GO:0009058|GO:0030170
Ssu6g2397 397 CDD AAT_like 30 395 - -
Ssu6g2397 397 Gene3D - 39 297 IPR015421 GO:0003824
Ssu6g2397 397 TIGRFAM DAPAT_plant: LL-diaminopimelate aminotransferase 2 395 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2397 Ssu-Chr6 55822587 55829046 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2397 K10206 - qsu:112023739 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2397 6 55822587 55829046 Ssu6g2397 6 55822587 55829046 ECH