Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2379 ATGGCTCAAGCGGGTTCTCTCTCTGCCGAAATGGAGACGCTGAATCACGTTCTATCACTAGTAGAGGCATTCCGAGCTTTCGACGCGGACAACGACGGGCGCATCACGCAGGCAGAGCTGGGCGGAATGTTGGGGTCACTCGGGTACAACGCTAGCGAGCAAGAAGTGAGGGCCATGATGCAAGAAGGTGACAAGAACAAGGACGGGTTGCTGAGCATACACGAGTTCCTGGAGATGAACACCAAGGACTTGGAGGGCGGGAATCTTGCAAACACCCTCAGCACAGCATTTGAAGCGTTGGATGAAGATGGCAACGAAATTTTGACCGGGGAAGAGCTTCACGAGGTGGTGCAAAACTTGGGTCTGGGCTTGTCTCTAGAAAACTGTCAGCATCTTGTTGCTTCTCTTGATGCGGATGGAGACGGAGCTGTGAGCTTGGATGAATTCCAACTCATAGTTGATTCCCTCCTCTAA 474 0.5232 MAQAGSLSAEMETLNHVLSLVEAFRAFDADNDGRITQAELGGMLGSLGYNASEQEVRAMMQEGDKNKDGLLSIHEFLEMNTKDLEGGNLANTLSTAFEALDEDGNEILTGEELHEVVQNLGLGLSLENCQHLVASLDADGDGAVSLDEFQLIVDSLL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2379 157 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Ssu6g2379 157 ProSiteProfiles EF-hand calcium-binding domain profile. 124 157 IPR002048 GO:0005509
Ssu6g2379 157 Gene3D - 84 157 - -
Ssu6g2379 157 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Ssu6g2379 157 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Ssu6g2379 157 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 21 153 - -
Ssu6g2379 157 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Ssu6g2379 157 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Ssu6g2379 157 Gene3D - 1 83 - -
Ssu6g2379 157 SMART efh_1 55 83 IPR002048 GO:0005509
Ssu6g2379 157 SMART efh_1 128 156 IPR002048 GO:0005509
Ssu6g2379 157 SMART efh_1 92 120 IPR002048 GO:0005509
Ssu6g2379 157 SMART efh_1 19 47 IPR002048 GO:0005509
Ssu6g2379 157 SUPERFAMILY EF-hand 14 151 IPR011992 -
Ssu6g2379 157 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 21 153 - -
Ssu6g2379 157 CDD EFh 20 79 IPR002048 GO:0005509
Ssu6g2379 157 Pfam EF-hand domain pair 93 150 IPR002048 GO:0005509
Ssu6g2379 157 Pfam EF-hand domain pair 21 79 IPR002048 GO:0005509
Ssu6g2379 157 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2379 Ssu-Chr6 55001122 55001595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2379 17 153 EF-hand Containing Proteins AT1G24620 35.766 1.77e-30 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2379 - K02183 gmx:100782291 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2379 6 55001122 55001595 Ssu6g2379 6 55001122 55001595 ECH