Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2375 ATGAAGATTCAACACCGTTTGCTCTGGGGCGAGAATCTCAACGCGATGCGGAAACGGTCCTCGGTTGACGGGAGAGGGAGCGTGAACGAGAAGAGCTTTCCGCGGATTTGCATTTGGGAGTCGGAGGGCGAAGCGGGCGACATCACGTGCGACATCATCGACAATGTGGAGGCGTCGATGTTTTACCGCGACGGAACGACGTCGGATTGCGGGGAGTTGAGTAGGAACCCTTGTTGTTTCGCGAGCGAGGTGAAGAGGCCCGGGGAAACTGTTTCCAAGGGGCACAAGAATTATGACTTGATGCTTAATCTGCAATTGGGGATAAGGTACTCTGTTGGGAAGGAGGCTTCGACGGTGCGAGAGCTTAAGCAGAGTGATTTTGATCCCAAGGAGAAGTTCTGGACTAGGTTTCCGCCGGAGGGGTCGAAGATTACACCGCCGCATCAGTCCGCGGAGTTCCGGTGGAAGGATTACTGCCCTGTGGTTTTCAGGCATTTGAGGAAGCTGTTTCAGGTGGATCCTGCCGATTACATGTTGGCTATATGTGGGGATGATGCTCTCCGGGAGCTTTCGTCTCCCGGGAAGAGTGGGAGCATCTTCTACTTGACTCAGGATGACAGATTCATGATAAAGACAGTGAAGAAATCTGAAGTCAAGGTGCTTATTCGGATGCTTCGGAGTTATTATCAACATGTGTCTCGATATGAGAATTCGCTCGTGACGAAATTCTATGGGGTGCACTGTGTCAAGCCTATTGGAGGCCAGAAGatcCGGTTCATTGTGATGGGCAATCTTTTCTGCTCCGAATATCCAATTCATAGACGATTTGATTTGAAAGGATCTTCACATGGCCGCACCACAGATAAACCTGAGGAGGACATTGATGAAACTACCACCCTCAAGGACCTTGATCTCAACTTTGTGTTTCGTGTACAAAGAAATTGGTTCCAGGAACTCATCAAACAAATTGAGCTGGACTGCGAGTTCTTGGAAGCCGAGAAAATCATGGATTACAGTCTTTTGGTTGGCATTCATTTTCGTGATGATAATACGTGTGACAAAATGGGATTGTCACCTTTTCTCTTACGCACTGGCAATCGAGATTCTTATCAGAATGAAAAGTTCATGCGTGGTTATCGCTTTCTTGAGCAGAGCTACAGGATAGAGATCGAGTTAAATCTGGAAGGAAATCATTAA 1197 0.4795 MKIQHRLLWGENLNAMRKRSSVDGRGSVNEKSFPRICIWESEGEAGDITCDIIDNVEASMFYRDGTTSDCGELSRNPCCFASEVKRPGETVSKGHKNYDLMLNLQLGIRYSVGKEASTVRELKQSDFDPKEKFWTRFPPEGSKITPPHQSAEFRWKDYCPVVFRHLRKLFQVDPADYMLAICGDDALRELSSPGKSGSIFYLTQDDRFMIKTVKKSEVKVLIRMLRSYYQHVSRYENSLVTKFYGVHCVKPIGGQKIRFIVMGNLFCSEYPIHRRFDLKGSSHGRTTDKPEEDIDETTTLKDLDLNFVFRVQRNWFQELIKQIELDCEFLEAEKIMDYSLLVGIHFRDDNTCDKMGLSPFLLRTGNRDSYQNEKFMRGYRFLEQSYRIEIELNLEGNH 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2375 398 Gene3D Phosphatidylinositol Phosphate Kinase II Beta 83 264 IPR027484 -
Ssu6g2375 398 PANTHER PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 2 11 385 - -
Ssu6g2375 398 Gene3D - 265 385 - -
Ssu6g2375 398 CDD PIPKc_AtPIP5K_like 97 348 - -
Ssu6g2375 398 SMART PIPK_2 123 396 IPR002498 GO:0016307|GO:0046488
Ssu6g2375 398 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 11 385 IPR023610 -
Ssu6g2375 398 SUPERFAMILY SAICAR synthase-like 93 380 - -
Ssu6g2375 398 ProSiteProfiles Phosphatidylinositol phosphate kinase (PIPK) domain profile. 92 398 IPR002498 GO:0016307|GO:0046488
Ssu6g2375 398 Pfam Phosphatidylinositol-4-phosphate 5-Kinase 182 356 IPR002498 GO:0016307|GO:0046488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2375 Ssu-Chr6 54921725 54924419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2375 17 383 Acyl Lipid Metabolism Gene Families AT1G21980 80.645 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2375 K00889 - gmx:100810432 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2375 6 54921725 54924419 Ssu6g2375 6 54921725 54924419 ECH