Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2373 ATGCATCCTTTCTGCTGCGTCTCCGCCGTCTCCGACCACTCCTCTCCGGCCAACCCCGCCACCCCCTTCGCCGGCCTCGCCATGCCGCCCCTCCCCGCCGCCGCGAGATCAGACTCCGCCCTCCGCCACGGCCAGGCCCACCACTGCGTCATCAACGGCGGCGACAGCGGCCGCGCGAGCCTCCCACCGGCGGCGGTGGCGGTGGACGTGAGGATCAACGACCTCGTCGGGAACGGAATCTCCGGGATTCTGCACAAGTGGGTGAACTACGGCAAGGGATGGAGGCCGCGCTGGTTCGTGCTCCAGGACGGTGTTCTCTCGTACTACAAAATTCACGGACCCGACAAGATCCTCGTGAACTCCGAAACCGAGAAGGGATCGAAGGTCATCGGCGACGAATCGACGCGCTTCATCTCTCGCAACCGCAGTTCGAATCACGTCAGCAACCACCGCCGGAAGCCCGTCGGCGAAATCCATCTCAAGGTTTCAACTATTCGCGAGAGCAGATCGGACGACAAGCGGTTTTCTGTTTTTACTGGGACTAAGAGACTCCACTTGAGGGCTGAGACTCGTGAGGATCGAGTGGCGTGGATGGAGGCCTTGCAGGCTGTGAAAGATATGTTTCCACGGATTTCCAACAGTGAGCTGATGGCGCCGGTGGACAATGTGGCTGTTTCGACTGAGAAGCTGAGGCGTCGGCTTGTGGAGGAGGGTGTCAGTGAGGCAGCCCTTCAGGACAGTGAGCAGATTATGAGAAATGAGTACGCGGCGCTGCAAAACCAGCTTCTGCTGCTTAAGCAGAAGCAGGTGACACTAATCGACACCCTGCGGCAATTAGAGACAGAAAAGGTTGATCTGGAGAACACTGTTGTTGATGAGAGCCAAAGACAGCTGAATGATCAAGAGGCTTCCTCTAGATTAAGACAGGAAAAATCTAGTGAAGCAAGTGCAAGTGAGTCTGAGGATGATAATGAGAGAAATGATGCAGCAGAGGAAGAAACAGATGATGATGACGCTGCCTTTTTTGACACTCGTGATTTTCTATCGTCGTccaattcttttaaaagtaatggATCTGATTTTAGGGTCTCATCTTTCTCGTCAGATGACGAAGGACTCTATGCAGTTGAATCAGAGGAGGATGTAGATCCTTCAATTAGATCAGTTGGAACCAACTATCCTTATGTTAAGCGGCGGAAGAAATTGCCTGACCCCGTTGAAAAGGAGAAAGGTGTCAGTCTTTGGTCAATGATTAAGGATAATATTGGGAAGGATCTAACTAAAGTTTGCCTTCCTGTTTATTTTAATGAGCCTCTCTCCTCTTTGCAAAAATGCTGTGAAGAAATGGAGTATTCGTATCTTCTGGACCGAGCATATGAATGGGGAAGGAGGGGTAATAGCCTCATGAGGATTCTCAATGTTGCTGCTTTTGCCATATCTGCCTATGCTTCAACTGAAGGGAGAATTTGCAAACCATTTAACCCATTACTAGGGGAAACATACGAGGCTGACTTTCCAGATAAAGGCTTCCGATTTTTCTCAGAGAAGGTCAGTCATCACCCAATGATAGTCGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGGGGGGATAGCAACTTAAAGAGTAAATTTTGGGGTCGCTCAATTCAGCTTGATCCTGTTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATTCCAGTGGAGTAAGGTTACGACATCAATATACAATCTCATATTAGGAAAGCTGTATTGTGATCATTATGGTACAATGCGTATACAGGGAAATCAAGATTACTCATGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGGTTCATGGTATTGTTCAAGACAGAAATGGGAAAACATTGTCTACATTACTTGGAAAATGGGATGACAGCATGCATTATATTAATGGAGACTATAGTGGGAAGGGGAAAGGTTATGAATCAATGTCAGATGCCCATCTACTATGGAAACGGAGCAGGCCTCCCAAGTTTCCCACTAGATATAACTTTACTCGGTTTGCCATCACATTAAATGAACTTACCCCTGGATTGAAGGAAAAGCTGCCACCTACTGATTCCAGGTTAAGACCAGACCAAAGGCATTTGGAAAATGGGGAATATGAGATGGCAAATTCTGAAAAGTTGCGGCTGGAACAGCGGCAACGCCAgGCTCGGAAAATGCAAGAAAGCGGTTGGGAACCCCGATGGTTTGCTAGGGATAAAGCAAGCGGTACCTACCGCTACTTAGGAGGGTATTGGGAGGCCCGAAAACAAGGAAACTGGAACGCCTGTCCTGACATTTTTGGCCAAATTCCTTCTGAACATATTTCAGATGAAGGTCAATAG 2379 0.4796 MHPFCCVSAVSDHSSPANPATPFAGLAMPPLPAAARSDSALRHGQAHHCVINGGDSGRASLPPAAVAVDVRINDLVGNGISGILHKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKILVNSETEKGSKVIGDESTRFISRNRSSNHVSNHRRKPVGEIHLKVSTIRESRSDDKRFSVFTGTKRLHLRAETREDRVAWMEALQAVKDMFPRISNSELMAPVDNVAVSTEKLRRRLVEEGVSEAALQDSEQIMRNEYAALQNQLLLLKQKQVTLIDTLRQLETEKVDLENTVVDESQRQLNDQEASSRLRQEKSSEASASESEDDNERNDAAEEETDDDDAAFFDTRDFLSSSNSFKSNGSDFRVSSFSSDDEGLYAVESEEDVDPSIRSVGTNYPYVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCCEEMEYSYLLDRAYEWGRRGNSLMRILNVAAFAISAYASTEGRICKPFNPLLGETYEADFPDKGFRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQDYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKTLSTLLGKWDDSMHYINGDYSGKGKGYESMSDAHLLWKRSRPPKFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRHLENGEYEMANSEKLRLEQRQRQARKMQESGWEPRWFARDKASGTYRYLGGYWEARKQGNWNACPDIFGQIPSEHISDEGQ 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2373 792 ProSiteProfiles PH domain profile. 77 206 IPR001849 -
Ssu6g2373 792 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 2 784 - -
Ssu6g2373 792 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 784 IPR000648 GO:0008289
Ssu6g2373 792 Gene3D - 710 772 - -
Ssu6g2373 792 Coils Coil 248 296 - -
Ssu6g2373 792 MobiDBLite consensus disorder prediction 292 339 - -
Ssu6g2373 792 Gene3D - 78 208 IPR011993 -
Ssu6g2373 792 MobiDBLite consensus disorder prediction 324 339 - -
Ssu6g2373 792 CDD PH_ORP_plant 80 213 - -
Ssu6g2373 792 SMART PH_update 78 208 IPR001849 -
Ssu6g2373 792 SUPERFAMILY Oxysterol-binding protein-like 408 787 IPR037239 -
Ssu6g2373 792 MobiDBLite consensus disorder prediction 303 323 - -
Ssu6g2373 792 Gene3D - 499 672 - -
Ssu6g2373 792 Pfam Oxysterol-binding protein 413 768 IPR000648 GO:0008289
Ssu6g2373 792 SUPERFAMILY PH domain-like 80 206 - -
Ssu6g2373 792 Coils Coil 718 738 - -
Ssu6g2373 792 Pfam Pleckstrin homology domain 85 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2373 Ssu-Chr6 54799465 54806532 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2373 K20456 - gmx:100812036 1400.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2373 6 54799465 54806532 Ssu6g2373 6 54799465 54806532 ECH