Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2369 ATGGCATTGCATCTTCAAATGTTCTTACCAATCGCTTTGGTTCTAGCAATAATTTTATCAGGGCAAAGAACATGCGAGTGCGCAAGAGTTTTCACTATAGTAAACTACTGCAAGGAGACCCTGTGGCCAGCGGTGACACCAGGAGACAACTTCAACGGCGGCGGTTTCGTCCTAAAACCGGGCCAATCCTCGGTGTTCACAGCCCCAGTTAGCTGGAGTGGCCGCATTTGGGCCCGAACGGGCTGCAAATTCGACCAAAACGGAAACGGGCAGTGCCAAACCGGTTCTTGCGGCACAACTCTGAAGTGTTCAGGCTCGGGGAAAACCCCTGCATCACTAGCGGAATTCACGCTGGCACAACCGGACTTTTACGACGTTAGCCTCGTTGACGGCTTCAACGTCCCCGTGTCCGTCAAGCCCATAAACGGAAAGGGAAACTGCAGCACTGCTGGGTGTGACTCTGACCTCAGGTCCACGTGCCCCAAGGAACTTGCCGTTAAGGTTAACGGCAAGACCGTTGGGTGCCGTAGCGCGTGCGATGTGTTCGACACGGATGAGTATTGCTGCAGAGGGCTCTATGGGAACCCCTCTACTTGCAAACCCACGTTTTATTCGAAGAAGTTTAAGGAGGCGTGCCCAACTTCTTACAGTTATGCTTATGATGACCCAACTAGTATTTTCACTTGCGCAGGGACGGACTATGTTGTAGCTTTCTGCGCTTCCAGGAAACGACAGCTATGCACTTACCATAATAACAAGCTTCACTGCAGTGGATCACAAGGGTTGAAGTCGTTGATTGGAAGGTGGTGGATCGTGATGATAACGGTGTTTTCAGTGCTGAGTTTGTGGGTTGGATTCTAG 861 0.5122 MALHLQMFLPIALVLAIILSGQRTCECARVFTIVNYCKETLWPAVTPGDNFNGGGFVLKPGQSSVFTAPVSWSGRIWARTGCKFDQNGNGQCQTGSCGTTLKCSGSGKTPASLAEFTLAQPDFYDVSLVDGFNVPVSVKPINGKGNCSTAGCDSDLRSTCPKELAVKVNGKTVGCRSACDVFDTDEYCCRGLYGNPSTCKPTFYSKKFKEACPTSYSYAYDDPTSIFTCAGTDYVVAFCASRKRQLCTYHNNKLHCSGSQGLKSLIGRWWIVMITVFSVLSLWVGF 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2369 286 CDD TLP-PA 30 239 - -
Ssu6g2369 286 SMART tha2 31 240 IPR001938 -
Ssu6g2369 286 Pfam Thaumatin family 35 239 IPR001938 -
Ssu6g2369 286 ProSiteProfiles Thaumatin family profile. 28 239 IPR001938 -
Ssu6g2369 286 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 11 253 - -
Ssu6g2369 286 PIRSF PR5 1 280 IPR001938 -
Ssu6g2369 286 PANTHER OS03G0233200 PROTEIN 11 253 IPR001938 -
Ssu6g2369 286 Gene3D Thaumatin 30 239 IPR037176 -
Ssu6g2369 286 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Ssu6g2369 286 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Ssu6g2369 286 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Ssu6g2369 286 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Ssu6g2369 286 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Ssu6g2369 286 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Ssu6g2369 286 SUPERFAMILY Osmotin, thaumatin-like protein 30 240 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2369 Ssu-Chr6 54673145 54675589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2369 1 239 Receptor kinase-like Gene Family AT5G38280 41.897 1.19e-52 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2369 - - gmx:100782658 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2369 6 54673145 54675589 Ssu6g2369 6 54673145 54675589 ECH