Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2360 ATGGAGGTGCTAAGGGTGCAAGCCATTGCTTCCCAATCCAAAGATGCTGCTATCCCAGCCATGTTTGTTATGCCAGAGACTGAGCAGCCAGGCATCACAACCGTTCATGGGGTGAATCTTGAGGTTCCCATTATTGACTTCAGCAACCAAGATGAAGGGAAAGTGGTGCGTGACATTGTGGAGGCAAGTAGGGACTGGGGCATGTTCCAAATTCTGAACCATGAGATACCCAAACATGTGATAAGCAAGTTGCAAAGTGTGGGCAAAGAGTTCTTTGAGTTACCCCAAGAAGAGAAAGAGCTATATGCTAGGCCTGCAGGTTCTCATTCTCTGGAAGGGTACGGCACAAAGTTACAAAAAGAGGTGAACGGCAAGAAAGGGTGGGTGGATCATTTGTTCCACGTTATATGGCCACCCTCCTCCATAAACTACCGTTTCTGGCCTACGAACCCCACTTCTTACAGGGAGGTGAATGAGGAATACTGCAAGTCCCTACGTGGGGTGGTAGACAAACTGTTCAAAAGTATGTCAATAGGGCTGGGTCTTGAAGAAAATGAGCTAAAGGAGGCTGCAAATGGAGATGACTTGTACTACCTTTTAAAAATCAACTATTACCCACCTTGTCCATGTCCTGATGTCGTCCTGGGTGTGCCACCACACACAGACATGTCCTACCTGACCATTCTGGTGCCCAACGAGGTGCAGGGCCTTCAAGCCTTTAGGGATGGTCACTGGTACGACGTTAAGTGTGTCCCCAATGCCCTCGTCATTCACATTGGCGACCAAATggagATACTGAGCAATGGAAAATATAAGGCCGTTTTTCACAGAACAACAGTGAACAAAGACGAGACAAGAATGTCGTGGCCAGTGTTCATAGAGCCCAAAGCAGAGCACCAAGTTGGTCCTCACCCAAAGCTGGTTAACCAAGACAATCCACCTAAATACAAGACCAAGAAATTCAAGGATTATGCTTACTGTAAGCTCAATAAGATCCCTCAGTGA 1005 0.4687 MEVLRVQAIASQSKDAAIPAMFVMPETEQPGITTVHGVNLEVPIIDFSNQDEGKVVRDIVEASRDWGMFQILNHEIPKHVISKLQSVGKEFFELPQEEKELYARPAGSHSLEGYGTKLQKEVNGKKGWVDHLFHVIWPPSSINYRFWPTNPTSYREVNEEYCKSLRGVVDKLFKSMSIGLGLEENELKEAANGDDLYYLLKINYYPPCPCPDVVLGVPPHTDMSYLTILVPNEVQGLQAFRDGHWYDVKCVPNALVIHIGDQMEILSNGKYKAVFHRTTVNKDETRMSWPVFIEPKAEHQVGPHPKLVNQDNPPKYKTKKFKDYAYCKLNKIPQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2360 334 SUPERFAMILY Clavaminate synthase-like 13 332 - -
Ssu6g2360 334 Pfam 2OG-Fe(II) oxygenase superfamily 200 295 IPR044861 -
Ssu6g2360 334 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 331 - -
Ssu6g2360 334 Gene3D - 1 332 IPR027443 -
Ssu6g2360 334 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 4 331 - -
Ssu6g2360 334 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 195 295 IPR005123 -
Ssu6g2360 334 Pfam non-haem dioxygenase in morphine synthesis N-terminal 42 148 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2360 Ssu-Chr6 53926105 53934590 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2360 13 325 Glycosyltransferase AT5G59530 30.000 1.20e-41 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2360 K05278 - gmx:778157 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2360 6 53926105 53934590 Ssu6g2360 6 53926105 53934590 ECH