Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2358 ATGAGAGCCGCGGTTGAAGGATCGTTAACCGAGAGGTTTGACGACGgcgaaaaggagaagaagaagaagcgcCGATCCAATCGTCGATCCAAGCAAAACCCTCCCTCAGCTTCAGCATCTGAAGTGAATGAGGCCCAGGGGGTGTTGCCGGAAGGTTCGGGGAAAATTGGAACACCTACTCATACTTCTGCATCATTGAGCAGTTCACTGAAGCAGGTCAATGTTTGTTCCCCTAATGAGCAAGGATTATCCAATGCGTCAAATGTCGCTTTTATTTCAATGCCCCCCATGCATATCAATGAGCAAGTGGAACCTGGTGATCTGCGAATCGTGCCAATGTATGGTGGAGGAATTGATTCAAAATCGTTTTCTGAGCCTGCTGGTTGGAGAGGGTCATCAGGAACTAATAAAAACAAGGACTCAGTTCCTTGTGGTCAAATTGGGCTTAGTGGCCAGAAGAATTATTTTAGTCCACACTGGTCTTTAGAGGCTGTTGAGAAGGCATTAGAGAAGGGCGATGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATAGATTTGAGGCCTACTGCAAAATTGATGGGTTGTCAACTGATGTTCTCATTGGTGGGATTCCAGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCTGTTAAGATTGATCCTTTGTCATTGTGGACAAAAATGAAAGGAACAAATGGGTCTTGTAACAACACTGCAACACTAGAAGGTTGCAACCTTCTTACAGAAGATAATGAAGTGGGTGGTAATATTTGTAAAGGGAAAGGCAAGGTAGATGATGATTGTGAGTCTGCCTATTGCAGAAGCTATCCTGGTCAAAGCAAGGAGGACGTTGATCGAAACTCCACCTCCTATAGAAATTATTCTTTTCCTGAAAAAAGAATTCTTTATGAGGATAATACCTCCTGGGGTTCTACTAACCATTTAGATCTACATGGTATGGCCAGCCATGACGGCATTAATGGACATCACTGTGCTGTTCCTGATTCCTTAAAGATCAATTCTTGTAATGGACAGCGTGATGTAGTTAATGCAGTGGAAAAGATGTCTTTGTTGGTTAATTTTTTCCCTTCTAAAAGACCAACTGGCAGGGTAGTTGCTATTATGGAGAGATCTCCACGTCGAGAGGGTATTGTTGGTCACCTTAATGTGAAGCAGTGGGTTCCTTTCAGGGACATAAACAAAAAGGATGTgaagaagaataagaatttGATTTCTGAGGATGAATACATCCAGCTGACACCAACTGATCCAAAGTTTCCAATGATGATGCTTCTTGTTAGAAAGTTACCCAAGTGCATTAAGAAAAGGCTGAAAAGTGGCGACGTGACAATTGAAATGGATCTGGTAGCTGCACAAATTGATGAGTGGGTTGAAGAAAGTCACTTTCCTGAGGCTTACATCTTGCGTGTTTTTGGACGAGGTGGTGAAGTTCAGACCCAACTAGATGCAATTTTGTTTCAGAATGCGATCTGTATGTCTGAATTTCCACCTGAAGCTATGTCCTGTCTGCCATGTGTTCCTTGGGAGGTGCCGCTGAAGGAAATTCAAAGCAGAATAGATCTTAGAAATTTGTGCATATTTACTATTGATCCTTCAGCTGCCACTGATCTGGATGATGCACTGTCCATTGAGAAGTTACCTAATGGAAATTATAGAGTAGGTGTCCACATTGCTGATGCGtcatattttgttttacctGACACAGCCTTAGATAGTGAGGCTCATCTTAGGTCAACAAGTGTCTATATGTTGCAAAGAAAGTTACCTATGTTGCCTGCATTGTTGTCAGAGAATATTGGTTCACTTAGTCCTGGAGTGGATCGACTTGCAGTTTCCATGCTCCTGGATATAAATCTTACGGGGGATGTTGTAGACCGATGGATTGGCCGTACTGTTATACACTCTTGTTGTAAACTTTCATATGAGCATGCTCAGGACATCATTGACAGGGCTTTCGATTTTGAAGGTACAAACTTTATTGAAGATGGCTATCCTAGAGTGTATGGCCATTTTGTATGGCCTGATGTTATTAAGTCTTTGAAGAGTCTTTATGAAATTTCGAATGTCTTGAAACACAAGAGGTTTACTGGTGGGGCTCTGCGGCTTGAAAACCCCAAAGTTGTTTTCTTGTTCGATGAAAATGGAGTTCCTTATGGTAGTATGCTTTCTGAAAGGAAAGAGTCAAATTTTCTTGTTGAGGAATATATGCTTTTGGCCAATAGAATTGCAGCTGAAGTCATATGTAGAGCTTATCCTGATGGTGCATTGTTGCGGAGGCATCCTGAACCTAATATGCGGAAGCTGAGAGAGTTTATGGTATTTTGTCAGAAGCATGGTTTAGAACTGAACGCGTCTTCATCTGGTCAGTTCCATTGGTCATTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTTTACAATATACTTATTTCTTATGCTACAAGGCCAATGCAGTTGGCATCTTACTTCTGTAGTGGAGATTTAAAGGACAGTGAAAATGAATGGGGTCATTATGCTTTGGCTGTCCCATTTTACACTCATTTTACGTCACCTCTGCGTCGCTATCCGGATATTATTGTTCACCGAACACTACTTGCTAGTATAGAGGCTGAGGAATTATATATGAGGCATCATTTGCAGGTTTACAAGGAAGTaaaagtgcaaaaaagatgCTTCACAGGcatcaattttgataaaaatgctGCAGAATCCATGGAAGGTAGGGAAGCACTGTCAGCTGCAGCTGTGAAGCATAGTGTTCCGAGTGCTGAAATACTTGCAGATATTGCTGCTTATTGCAATGAGAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGATAAACTTTACACGTGGTTTCTCCTGAAGAAAAAGGAGGTCTTATTGTCAGAAGCAAGAATAATGGGACTAGGCCCAAGATTCATGtcaatttatattcaaaagcTAGCTATTGAGCGACGCATATATTATGATGAAGTTGAAGGCTTGACTGTGGAGTGGCTTGAGACAACATCCACTTTGGTGCTTAGCATGTCTACTAATAGGTGTGCATTTAGGAGGGGCTGCCCTAATAAGTGGAGGGCATTTGAAGAAGCTGCGTTGCTTACTTGTCCATGTAACCTGAAATTTACCATGGATAATTCTGACCAAAGTGATTCAGTGAAAGTGGATGATAGTATATCTGCCATGGACAGGGAGCCCATTTCAGGATCAGACTCATCGGAAACTGAAATTGAACCTGTAGTTTTTCCGCTGACAGTGTGTCTTCTTTCAACAATTCCAGTAGCACTTCATGCTGTTGGTGGTGATGATGGGCCCCTTGATATTGGAGTGAGGCTGTACATGAGCTCCTATTTTGGGTGA 3399 0.4098 MRAAVEGSLTERFDDGEKEKKKKRRSNRRSKQNPPSASASEVNEAQGVLPEGSGKIGTPTHTSASLSSSLKQVNVCSPNEQGLSNASNVAFISMPPMHINEQVEPGDLRIVPMYGGGIDSKSFSEPAGWRGSSGTNKNKDSVPCGQIGLSGQKNYFSPHWSLEAVEKALEKGDVFKALFHVNAHNRFEAYCKIDGLSTDVLIGGIPAQNRAVEGDIVAVKIDPLSLWTKMKGTNGSCNNTATLEGCNLLTEDNEVGGNICKGKGKVDDDCESAYCRSYPGQSKEDVDRNSTSYRNYSFPEKRILYEDNTSWGSTNHLDLHGMASHDGINGHHCAVPDSLKINSCNGQRDVVNAVEKMSLLVNFFPSKRPTGRVVAIMERSPRREGIVGHLNVKQWVPFRDINKKDVKKNKNLISEDEYIQLTPTDPKFPMMMLLVRKLPKCIKKRLKSGDVTIEMDLVAAQIDEWVEESHFPEAYILRVFGRGGEVQTQLDAILFQNAICMSEFPPEAMSCLPCVPWEVPLKEIQSRIDLRNLCIFTIDPSAATDLDDALSIEKLPNGNYRVGVHIADASYFVLPDTALDSEAHLRSTSVYMLQRKLPMLPALLSENIGSLSPGVDRLAVSMLLDINLTGDVVDRWIGRTVIHSCCKLSYEHAQDIIDRAFDFEGTNFIEDGYPRVYGHFVWPDVIKSLKSLYEISNVLKHKRFTGGALRLENPKVVFLFDENGVPYGSMLSERKESNFLVEEYMLLANRIAAEVICRAYPDGALLRRHPEPNMRKLREFMVFCQKHGLELNASSSGQFHWSLEQIREKLKGDPVLYNILISYATRPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLASIEAEELYMRHHLQVYKEVKVQKRCFTGINFDKNAAESMEGREALSAAAVKHSVPSAEILADIAAYCNERKLASRNVKDACDKLYTWFLLKKKEVLLSEARIMGLGPRFMSIYIQKLAIERRIYYDEVEGLTVEWLETTSTLVLSMSTNRCAFRRGCPNKWRAFEEAALLTCPCNLKFTMDNSDQSDSVKVDDSISAMDREPISGSDSSETEIEPVVFPLTVCLLSTIPVALHAVGGDDGPLDIGVRLYMSSYFG 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2358 1132 Gene3D - 401 485 - -
Ssu6g2358 1132 ProSitePatterns Ribonuclease II family signature. 848 872 IPR022966 -
Ssu6g2358 1132 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1107 IPR028591 GO:0000175|GO:0034427
Ssu6g2358 1132 Gene3D - 149 244 - -
Ssu6g2358 1132 SUPERFAMILY Nucleic acid-binding proteins 370 499 IPR012340 -
Ssu6g2358 1132 Pfam RNB domain 527 877 IPR001900 GO:0003723|GO:0004540
Ssu6g2358 1132 MobiDBLite consensus disorder prediction 1 65 - -
Ssu6g2358 1132 MobiDBLite consensus disorder prediction 7 21 - -
Ssu6g2358 1132 PANTHER DIS3-LIKE EXONUCLEASE 2 20 1130 - -
Ssu6g2358 1132 SUPERFAMILY Nucleic acid-binding proteins 153 379 IPR012340 -
Ssu6g2358 1132 SUPERFAMILY Nucleic acid-binding proteins 488 969 IPR012340 -
Ssu6g2358 1132 Pfam Dis3-like cold-shock domain 2 (CSD2) 418 497 IPR041505 -
Ssu6g2358 1132 SMART RNB_2 527 881 IPR001900 GO:0003723|GO:0004540
Ssu6g2358 1132 PANTHER RIBONUCLEASE 20 1130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2358 Ssu-Chr6 53854171 53859864 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2358 K18758 - gmx:100817387 1986.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2358 6 53854171 53859864 Ssu6g2358 6 53854171 53859864 ECH