Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2352 ATGTGGGTCCCACCGATGGAGCCTCCGAAGAGGAACCAAACCCAAACCAAGCTCACCCGAACCCAATCCTCGCTGCTTCGGTGTTCCTCCCCCACCACGCGCTCTTCCGTCCACAGCCTCTCCTCGGTCAACGAGTTCGACTTTCCCGACGAGCCCTCCGACGCGAGCAGCACGGGCAAGACAAAGCCCAGGCCGAACAAAATAAAGCCCGGTCCGATCCGGTTCGCGGTCGGGCCGGTCCTCGGGTTCTCGTGCTCACTGCTTTTATGTTTCTTCTACCTCGGAGCCCGGACGGGGACCACCTCCGAGAGCGTTCTGGTGGTGCTGGTTTTCCTCGCGGCGGCGCTCTACTTCGCGAACCGGAACAGGGGGCCGATCCAGCGAACCGTTTCGGTTCTGAAGCACGCTTGGGATGGGAGCCTGAAGCGGCTGGGTTTTTCTTCCAAGGGGAGCGAGAAACCGGTTCAGTGGTTCATCGGGGAGGGGGCGGTGAAGAGTAAGAGTGACAAGAGGGGTGGTGGGAGGGAGGGGGTGGAGTTTTACAGCAATGGGGATTTTTATGAGGGGGAGTTTCATGGAGGGAGGTGTAATGGGAGTGGGGTGTATCACTACTTTGTGAGTGGGAGGTATGAGGGGGATTGGGTGGATGGGAGGTATGATGGGTATGGGGTTGAGAGTTGGGCTAGGGGGAGCAGGTACAAGGGGTGTTACAGGCAGGGGTTGAGGCATGGTTTTGGGGTGTACAAGTTTTACACTGGAGACTCCTATGCTGGGGAGTGGTGTAATGGCCAGAGTCATGGGGTGGGAGTGCAGTCTTGCTCTGATGGGAGTTGTTATGTTGGGGAGTTTAAGTATGGGGTCAAGCATGGACTTGGGTGTTACCATTTCAGGTTGGTTTCTCATGGtcagttttga 915 0.5694 MWVPPMEPPKRNQTQTKLTRTQSSLLRCSSPTTRSSVHSLSSVNEFDFPDEPSDASSTGKTKPRPNKIKPGPIRFAVGPVLGFSCSLLLCFFYLGARTGTTSESVLVVLVFLAAALYFANRNRGPIQRTVSVLKHAWDGSLKRLGFSSKGSEKPVQWFIGEGAVKSKSDKRGGGREGVEFYSNGDFYEGEFHGGRCNGSGVYHYFVSGRYEGDWVDGRYDGYGVESWARGSRYKGCYRQGLRHGFGVYKFYTGDSYAGEWCNGQSHGVGVQSCSDGSCYVGEFKYGVKHGLGCYHFRLVSHGQF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2352 304 Pfam MORN repeat 187 204 IPR003409 -
Ssu6g2352 304 Pfam MORN repeat 233 254 IPR003409 -
Ssu6g2352 304 Pfam MORN repeat 256 277 IPR003409 -
Ssu6g2352 304 Pfam MORN repeat 210 232 IPR003409 -
Ssu6g2352 304 Pfam MORN repeat 279 296 IPR003409 -
Ssu6g2352 304 MobiDBLite consensus disorder prediction 9 43 - -
Ssu6g2352 304 SMART morn 185 206 IPR003409 -
Ssu6g2352 304 SMART morn 231 252 IPR003409 -
Ssu6g2352 304 SMART morn 277 298 IPR003409 -
Ssu6g2352 304 SMART morn 254 275 IPR003409 -
Ssu6g2352 304 SMART morn 208 229 IPR003409 -
Ssu6g2352 304 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 22 171 - -
Ssu6g2352 304 MobiDBLite consensus disorder prediction 1 69 - -
Ssu6g2352 304 Gene3D - 262 304 - -
Ssu6g2352 304 Gene3D - 167 216 - -
Ssu6g2352 304 Gene3D - 217 261 - -
Ssu6g2352 304 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 175 297 - -
Ssu6g2352 304 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE 22 171 - -
Ssu6g2352 304 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 175 297 - -
Ssu6g2352 304 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 181 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2352 Ssu-Chr6 53741485 53742399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2352 171 295 Acyl Lipid Metabolism Gene Families AT3G09920 36.667 7.07e-18 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2352 - - gmx:100806547 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2352 6 53741485 53742399 Ssu6g2352 6 53741485 53742399 ECH