Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2348 ATGTCCATGGCAATGGCCAGTACCACCCCACACTCCCGTAGTCTCTCTTTCTCACTCTCCCTCATTCATCTCGCTCTCCTCCTCTCCCTGCCCCTCCACTCCGCAACCGCAACCCACCACGAAGAAGAAGACACCCCCATCACGCGCTTCCAAAGCTACCTCCGCATCAACACGGCCCACCCGACCCCTGACTACTCCTCCGCGGTCTCCTTCCTCAAGGCCCAGGCCCACTCCCTGGGCCTGATCACCAAAACCCTCGAGTTCGCCCCCGGCAAGCCCCTCCTCCTCCTCACCTGGCCCGGCTCCGACCCCTCCCTCCCCTCCCTCCTCCTCAACTCCCACCTCGACTCCGTCCCCGCCGAGCCCGCCAAGTGGCTCCACCCTCCCTTCGCCGCCCGCCGCGCCCCCGACGGCGCCATCTTCGCCCGCGGCGCCCAGGACGACAAGTGCATCGCCATGCAGTACCTCGAGGCCATCCGCAACCTCAAGGCCCGCGCCTTCGCCCCCCTCCGCGCCGTCCACGTGTCCCTCGTCCCCGACGAGGAAATCGGCGGCCTCCACGGCGCCGCCAGGTTCGTGGAGTCCGAGGAGTTTCGAGGACTCAAAGTGGGCTTCGCGCTCGACGAGGGGCAGGCCTCGCCGGGCGACGAGTTTAGGGTTTTCTTTGCGGACAGGGTTCCGTGGAACCTGAAGATCAGGGCGAGGGGGAGGCCCGGACACGGGTCCAGGATGTATGATGACAGTGCGATGGAGAACTTGATGAGGAGTGTGGAGGTTGTGAGTAGGTTTAGGGAGAGCCAGTTCGAGGTGGTTAAGGCGGGGAAGGCGTTGAATGCTGAGGTTGTGTCGGTGAATCCGGTTTATGTTAAGGCTGGAATTGTTTCTGAAGACGGGTTTGCGATGAACGTGCAACCTTCGGAGGCGGAAGCCGGGTTTGATCTGAGGCTGACGCCGACGACGGACCCGGAGGAAATGAGGAGGAGAACTGTGGCAGAATGGGCGCCGGCTGTCAGGAATATGTCATATGAGATTATAGAGAAAGGACCCATTAGAGACTATGCGGGACGCCCGTTAGTGACTGCAACTAATGATTCCAATCCATGGTGGTCAGTTTTCAAGCAAGCTATCACATCTGTTGGAGAAAAACTTTCAAGGCCTGAAATTCTTGCATCCACAACTGATGCTCGATTCCTCAGACAGAAAGGAATCCCTGTACTCGGTTTCTCCCCAATGAGAAATACTCCCATCTTGCTTCATGACCACAATGAGCACTTAAAAGATACTGTGTACATGAAGGGAATACAGGTATACGAGTCTCTAATAAGTTCCTTGAGTACATTTAAAGAAGCTTCACATTAA 1359 0.5791 MSMAMASTTPHSRSLSFSLSLIHLALLLSLPLHSATATHHEEEDTPITRFQSYLRINTAHPTPDYSSAVSFLKAQAHSLGLITKTLEFAPGKPLLLLTWPGSDPSLPSLLLNSHLDSVPAEPAKWLHPPFAARRAPDGAIFARGAQDDKCIAMQYLEAIRNLKARAFAPLRAVHVSLVPDEEIGGLHGAARFVESEEFRGLKVGFALDEGQASPGDEFRVFFADRVPWNLKIRARGRPGHGSRMYDDSAMENLMRSVEVVSRFRESQFEVVKAGKALNAEVVSVNPVYVKAGIVSEDGFAMNVQPSEAEAGFDLRLTPTTDPEEMRRRTVAEWAPAVRNMSYEIIEKGPIRDYAGRPLVTATNDSNPWWSVFKQAITSVGEKLSRPEILASTTDARFLRQKGIPVLGFSPMRNTPILLHDHNEHLKDTVYMKGIQVYESLISSLSTFKEASH 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2348 452 Pfam Peptidase family M20/M25/M40 110 442 IPR002933 GO:0016787
Ssu6g2348 452 Pfam Peptidase dimerisation domain 228 328 IPR011650 -
Ssu6g2348 452 TIGRFAM Ac-peptdase-euk: N-acyl-L-amino-acid amidohydrolase 38 446 IPR010159 GO:0004046|GO:0005737|GO:0006520
Ssu6g2348 452 SUPERFAMILY Bacterial exopeptidase dimerisation domain 229 336 IPR036264 -
Ssu6g2348 452 PANTHER AMINOACYLASE-1 30 451 - -
Ssu6g2348 452 Gene3D Zn peptidases 36 229 - -
Ssu6g2348 452 ProSitePatterns ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 145 184 IPR001261 -
Ssu6g2348 452 Gene3D - 230 340 - -
Ssu6g2348 452 SUPERFAMILY Zn-dependent exopeptidases 44 446 - -
Ssu6g2348 452 PANTHER PUTATIVE-RELATED 30 451 - -
Ssu6g2348 452 Gene3D - 366 446 - -
Ssu6g2348 452 PIRSF ACY-1 36 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2348 Ssu-Chr6 53648919 53656170 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2348 K14677 - gmx:100817383 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2348 6 53648919 53656170 Ssu6g2348 6 53648919 53656170 ECH