Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2347 ATGGCTCGGGGCATAATGGACCTAAGCTCCGGAACTGGAACGGCTCTGCTGATGTTGTTGGGTTTCACCACTCACTTTTATGTGCTCCCACGAGCAGAGGCTGTGTGGCTAACAATCCCCAGTTCGGGGACTAAGTGCGTGTCTGAGGAAATCCAGGCCAACGTGGTTGTTTTAGCCGATTACTATGTTGTCACTCCAGAGGGTCCCCAGCCTCATACAGTTTCCGTCAAGGTAACATCACCTTATGGAAATAACCTTCACCATAATGAAAATGTTACTCAAGGTCAATTTGCATTTACAACAGCCGAGAGTGGGAACTACGTGGCGTGCTTTTGGATGGATGGTAAACATCAAGAAGAAGCAACTGTCAGCCTTGAATGGAAAACTGGAATTTCTGCCAAGGATTGGGAGTCTGttgcaaagaaagaaaagatcgAGGGTGTTGAACTTGAGCTCAGGAAACTTGAAGGAGCAGTGGAAGCCATCCACGGctatctaatttatttgaagGATAAGGAAGCAAGGATGAGGGAAGTCAGTGAAAGAACAAATGGTAGAGTCGCTTGGTTTAGCACCATGTCTCTTGGTGTCTGCATTTTGGTTTCGGTATTGCAAGTGTGGTATCTGAAGCGCTTTTTTCGGAAGAAGAAACTCATATAG 660 0.4424 MARGIMDLSSGTGTALLMLLGFTTHFYVLPRAEAVWLTIPSSGTKCVSEEIQANVVVLADYYVVTPEGPQPHTVSVKVTSPYGNNLHHNENVTQGQFAFTTAESGNYVACFWMDGKHQEEATVSLEWKTGISAKDWESVAKKEKIEGVELELRKLEGAVEAIHGYLIYLKDKEARMREVSERTNGRVAWFSTMSLGVCILVSVLQVWYLKRFFRKKKLI 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2347 219 Pfam emp24/gp25L/p24 family/GOLD 36 214 IPR009038 -
Ssu6g2347 219 PANTHER EMP24/GP25L/P24 FAMILY PROTEIN 13 219 - -
Ssu6g2347 219 SMART EMP24_GP25L_2 34 214 IPR009038 -
Ssu6g2347 219 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 13 219 IPR015720 -
Ssu6g2347 219 ProSiteProfiles GOLD domain profile. 44 154 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2347 Ssu-Chr6 53615962 53618501 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2347 K20352 - gmx:100799948 370.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2347 6 53615962 53618501 Ssu6g2347 6 53615962 53618501 ECH