Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2330 ATGGACGAGCCCTCGCTGCAACTCGTCTCCGAAATCGCAACTCGCCTCGTTGAGCGAACTCGTCCCAACAAAGACTTCATCGTCAAATCCCTCCGACAAGCTGCAAATGCTTTGTCTGAGGTAAAACAGTCTCCTCAACCGCGAATGGCCAAAGAAGTACAAGCTGCTAAGAAACGAGAAGCTGCTTTGAAGCCCCTGGCAAATGCTGTGGTTTGCTGCCATCTGCTTCAACATGCAGATAAGGAAGTTAGGCTTCTGGTTGCTATGTGTGTCACTGATCTTTTTAGAATCATGGCACCTGAACCACCTTTTGTAGCCAAGCATTTGAGGGATGCATTTAAACTTATCATTAGTTTGTTTGCGGATCTAGCTGATACTACAAGTCCATTCTTTTCAAAAAGGCTTAAAGTATTGGAGACCGTGGCTCAATTAAGGTGTTGTGTGATAATGCTGGAGATTGACTGCATAGACTTGGTTCTCGAGTTGttcaatattttcttctcaGCTGTGAGAGATGAACACCATGATAGTTTGATTAGTGCAATGACTTctataatgataaatattttgaatgagagTGAGGAGGCTTCTCAGCAACTATTGGAAGTGATTTTACGAAAtcttataaagcaaaaaaaaGATGCTTCTTATCGACTTGCTGCATCAGTCATCAAAACTTGTGCACAAGAGGATGAGCTGAACCCCCTAGTTTGTGGGTTTTTAACTTCTTGTATACATGATAGAGACGCTATGGACAGTGAGCTTAAAGAGCATTACCATGAAATTTTCGTTAAAGTTTTTGAGTGTGCGCCTCACATGCCTCTTGCTGTCATCCCAAGCTTAATTAACGAATTATCGGCCGATGAGGTTGATGTGCGGATAAAAGCTGTTAATTTGGTGGGGAAGCTTTTTGCACTTCCTGAACATCATGTTGCTTGGAAGTATCATGAACTTTTTGCGGagtttttgaaaagattttctGATAAATCTGTGGATGTTAGGATTAGTGCTCTACAATGTGCTAAAACTATCTATTTGGCGAATCCCTGGGGAGAGAATCACAAGATGAAATTATCACTTCTGTTGAAGATCGATTACTAG 1101 0.396 MDEPSLQLVSEIATRLVERTRPNKDFIVKSLRQAANALSEVKQSPQPRMAKEVQAAKKREAALKPLANAVVCCHLLQHADKEVRLLVAMCVTDLFRIMAPEPPFVAKHLRDAFKLIISLFADLADTTSPFFSKRLKVLETVAQLRCCVIMLEIDCIDLVLELFNIFFSAVRDEHHDSLISAMTSIMINILNESEEASQQLLEVILRNLIKQKKDASYRLAASVIKTCAQEDELNPLVCGFLTSCIHDRDAMDSELKEHYHEIFVKVFECAPHMPLAVIPSLINELSADEVDVRIKAVNLVGKLFALPEHHVAWKYHELFAEFLKRFSDKSVDVRISALQCAKTIYLANPWGENHKMKLSLLLKIDY 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2330 366 SUPERFAMILY ARM repeat 73 349 IPR016024 -
Ssu6g2330 366 Pfam Sister chromatid cohesion protein PDS5 protein 25 352 - -
Ssu6g2330 366 Gene3D - 5 354 IPR011989 -
Ssu6g2330 366 PANTHER PRECOCIOUS DISSOCIATION OF SISTERS 5, ISOFORM A 4 352 - -
Ssu6g2330 366 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 4 352 IPR039776 GO:0007064
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2330 Ssu-Chr6 53020643 53023916 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2330 K11267 - gmx:100777822 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2330 6 53020643 53023916 Ssu6g2330 6 53020643 53023916 ECH