Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2323 ATGAAGACCAAAGTTCCTTGTCGCCTCGCCAAATTCATGTCTCTAATGGAGTTTCCTAGCATTACCAAGTTTCACATCCCACTTGGGTCTTCTCTTGTGGTTTTATCTATTGCTGCCACAATACTGAGCCCTGTAATGGCcacaaaaaattgtcatttccCTGCCATCTTTAACTTCGGTGCCTCAAATTCTGACACTGGTGGCTTGGCTGCTTCGCTTTTCGCAGTAACATCACCATATGGAGAGACCTATTTTCATAGACCTGCTGGAAGGTTCTCTGATGGCCGAATCATTATTGATTTCATAGcACGGAGTTTTGGACTCCCTTTTCTCAGTCCATATCTTGATTCACTGGGGACCAACTTCTCACGTGGCGCAAACTTTGCAACAGCAGGATCCACAATCAGACCCCTACAAGGTCTAGCTCAGCTTAGATTCAGTCCTTTCGATCTTGGAGTTCAGTACACACAATTCAAAGGTTTTAAACCCAAAACACAGTTCATTAGAGATCAAgGTGGGGTATTTGCAACACTGATGCCCAAAGAAGAGTACTTTCCTGAAGCTTTATACACATTTGATATTGGCCAAAATGATCTTACAGCTGGCTTTTTTGGTAACATGACTTTACTGCAAGTCAATGCTTCAGTACCTGATATAATCAGGAGTTTCACATCAAATGTCATGAACATACACAATTTGGGGGCTAGATCATTTTGGATATACAACACAGGACCCATTGGTTGCCTCCCTTTAATTTTGGCCAATTTTCTACCTGCTGAAAGGGATAGGTACGGTTGTGCAAAGGCATACAATGAGGTGGCTCAAAATTTTAACCAGAATTTGAAGGAAGCCTTAGCTCAACTTCGTAAGGACCTTCCTTCGGCAGCAATCACATACGTAGATGTCTACTCTGCTAAGTACTCTCTTTTCACCAACCCAAAGAAATATGGATTTGAGCTCCCACTTGTTGCTTGTTGTGGCTATGGAGGGAAGTACAACTTCAGCAATAGTGTTGGATGTGGAGGAATCATAAAGGTCAATGGCACTGATATTTTTGTGGGTTCATGTGAAAAACCATCTGTTAGAGTGATATGGGATGGGACCCACTACACCGAAGCAGCTAACAAGGTTGTCTTTGATCTAATCTCTTCTGGGGCTTTCACAGATCCACCCATTCCCTTGAAAATGGCATGTCATAGAAATTTCACATAA 1212 0.4175 MKTKVPCRLAKFMSLMEFPSITKFHIPLGSSLVVLSIAATILSPVMATKNCHFPAIFNFGASNSDTGGLAASLFAVTSPYGETYFHRPAGRFSDGRIIIDFIARSFGLPFLSPYLDSLGTNFSRGANFATAGSTIRPLQGLAQLRFSPFDLGVQYTQFKGFKPKTQFIRDQGGVFATLMPKEEYFPEALYTFDIGQNDLTAGFFGNMTLLQVNASVPDIIRSFTSNVMNIHNLGARSFWIYNTGPIGCLPLILANFLPAERDRYGCAKAYNEVAQNFNQNLKEALAQLRKDLPSAAITYVDVYSAKYSLFTNPKKYGFELPLVACCGYGGKYNFSNSVGCGGIIKVNGTDIFVGSCEKPSVRVIWDGTHYTEAANKVVFDLISSGAFTDPPIPLKMACHRNFT 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2323 403 Gene3D SGNH hydrolase 44 386 IPR036514 -
Ssu6g2323 403 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 24 402 - -
Ssu6g2323 403 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 24 402 - -
Ssu6g2323 403 Coils Coil 267 291 - -
Ssu6g2323 403 Pfam GDSL-like Lipase/Acylhydrolase 56 382 IPR001087 GO:0016788
Ssu6g2323 403 CDD SGNH_plant_lipase_like 54 385 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2323 Ssu-Chr6 52820486 52852577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2323 18 389 Acyl Lipid Metabolism Gene Families AT4G10950 27.202 4.59e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2323 - - gmx:100818460 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2323 6 52820486 52852577 Ssu6g2323 6 52820486 52852577 ECH