Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2303 ATGAAGCTTGCTCCAGAGTATGAGAAAGCTGCTTCTATCTTGAGTAACAATGATCCTCCGGTTTTTTTGGCTAAAGTTGATGCCAATGATGAAAAGAACAGAGAACTTGCAAACGAATTTCAAGTTCGGGGATTTCCAACAATTAAGATTCTGAGAAATGGGGGCAAGGTTGTTCAAGATTACAAGGGTCCCCGTGAAGCAAATGGTATTGTTGACTATTTGAAGAAGCAAAGTGGTCCTGCATCAACTGAAATTAAATCTGCAGATGCTGCTAGTATTTTGATTGGCGAAAATAAAGTTGTTATTGTTGGGGTTTTCCCAAAATTTTCTGGGGAGGAGTTTGAGAACTTTATTGCATTGGCAGAGAAATTGTGTTTTGAATATGGTTTCGGTCACACCTTGGATGCCAAACACCTTCCACGTGGAGAATCATCAGTGACTGGGCCTGTAGTTAGATTATTCAAGCCATTTGATGAACTTTTTGTTGATTTCCAGGATTTCCATGTGGAAGCTTTAGAGAAATTTGTTGAAGAATCTAGTGTCCCAGTTGTGACTGTCTTTAACAATGACCCAAGCAATCACCCTTTTGTTATCAAATTCTTTGACAATCCAAATGTAAAGGCAATGATGTTCATCAACTTCACTGCTGACACTGCTGATtctctcaaattaaaatacCGTGAATCTGCTGAGCAATATAGACAACAGGGCATAAGCTTTCTGGTGGGAGACATTGAGGCTAGTCAGGTTGCATTCCAGTATTTTGGCCTTGAGGAAAACCAAGTGCCTCTAATTGTCATTCAACACAATGATGGGAAGaagtttttgaaaactaatttggAACCTGATCAAATTGCAACTTGGTTGACGGCATTCAAGGATGGAAATGTCGAACCATATAAGAAGTCTGAACCTATTCCTGAAGTTAACAATGAACCTGTTAAAGTGGTAGTTGCAGACAGTCTTCAGGACATTGTTTTCAACTCAGGGAAAAATGTTTTGCTGGAGTTTTATGCTCCTTGGTGTGGTCATTGCAAAAAGTTGGCTCCGATATTGGAGGGAGTTGCTGTTTCCTATCAAAGTAACCCTGATGTTATTATTGCAAAACTGGATGCAACTGCCAATGATATACCACGCGAGACTTTTGATGTACAAGGTTATCCAACTCTGTACTTCAGGTCAGCAAGTGGAAAGATATCACAGTATGATGGAAATAGGACGAAGGAAGATATCATagattttattgaaaagaaCCGGGATAAATCGGATCAGCAAGAACAAGTAAAAGATGAACTTTGA 1299 0.3826 MKLAPEYEKAASILSNNDPPVFLAKVDANDEKNRELANEFQVRGFPTIKILRNGGKVVQDYKGPREANGIVDYLKKQSGPASTEIKSADAASILIGENKVVIVGVFPKFSGEEFENFIALAEKLCFEYGFGHTLDAKHLPRGESSVTGPVVRLFKPFDELFVDFQDFHVEALEKFVEESSVPVVTVFNNDPSNHPFVIKFFDNPNVKAMMFINFTADTADSLKLKYRESAEQYRQQGISFLVGDIEASQVAFQYFGLEENQVPLIVIQHNDGKKFLKTNLEPDQIATWLTAFKDGNVEPYKKSEPIPEVNNEPVKVVVADSLQDIVFNSGKNVLLEFYAPWCGHCKKLAPILEGVAVSYQSNPDVIIAKLDATANDIPRETFDVQGYPTLYFRSASGKISQYDGNRTKEDIIDFIEKNRDKSDQQEQVKDEL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2303 432 PANTHER PROTEIN DISULFIDE ISOMERASE 1 426 - -
Ssu6g2303 432 Gene3D Glutaredoxin 301 432 - -
Ssu6g2303 432 Gene3D Glutaredoxin 1 77 - -
Ssu6g2303 432 Pfam Thioredoxin-like domain 106 289 - -
Ssu6g2303 432 PANTHER PROTEIN DISULFIDE-ISOMERASE 1 426 - -
Ssu6g2303 432 TIGRFAM ER_PDI_fam: protein disulfide isomerase 2 426 IPR005792 GO:0003756
Ssu6g2303 432 CDD PDI_b'_family 197 293 - -
Ssu6g2303 432 SUPERFAMILY Thioredoxin-like 83 182 IPR036249 -
Ssu6g2303 432 TIGRFAM pdi_dom: protein disulfide-isomerase domain 318 418 IPR005788 GO:0003756
Ssu6g2303 432 CDD PDI_a_family 2 74 - -
Ssu6g2303 432 ProSitePatterns Thioredoxin family active site. 334 352 IPR017937 -
Ssu6g2303 432 SUPERFAMILY Thioredoxin-like 2 80 IPR036249 -
Ssu6g2303 432 PRINTS Thioredoxin family signature 341 350 - -
Ssu6g2303 432 PRINTS Thioredoxin family signature 383 394 - -
Ssu6g2303 432 PRINTS Thioredoxin family signature 333 341 - -
Ssu6g2303 432 SUPERFAMILY Thioredoxin-like 279 421 IPR036249 -
Ssu6g2303 432 CDD PDI_a_PDI_a'_C 313 415 - -
Ssu6g2303 432 CDD PDI_b_family 82 178 - -
Ssu6g2303 432 Pfam Thioredoxin 314 417 IPR013766 -
Ssu6g2303 432 Pfam Thioredoxin 2 76 IPR013766 -
Ssu6g2303 432 Gene3D Glutaredoxin 78 183 - -
Ssu6g2303 432 Gene3D Glutaredoxin 184 300 - -
Ssu6g2303 432 SUPERFAMILY Thioredoxin-like 179 311 IPR036249 -
Ssu6g2303 432 ProSiteProfiles Thioredoxin domain profile. 300 420 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2303 Ssu-Chr6 52206188 52216220 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2303 K09580 - gmx:100788702 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2303 6 52206188 52216220 Ssu6g2303 6 52206188 52216220 ECH