Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2291 ATGAAGTTACAGGATTTGATGGTGTACATGATGATGAAGTTGTTGATGGGGTGTTGGTGTTCTCTTGCACTACTTTTAATGTTGGCTTTTGGTACTGCCCATGGTGGCAATGTCACCTACGACAGAAGATCCTTGATCATTGATGGCCAATATAGAATCCTCTTCTCTGGTTCAATTCACTATCCTCGTAGCACCCCTGAGATGTGGCCTGATTTAATTGCGAAAGCTAAGGAAGGAGGGTTAGATGTCATACAAACTTATGTGTTCTGGAACCTTCACGAACCGCAAAAAGGCCAGTATGATTTCAGTGGAAGGCGTGATTTAGTGAGATTCATTAAGGAAGTCCAAGGCCAGGGTTTACACCTGACCCTCCGAATTGGACCATTCATTGAAAGTGAATGGACTTACGGGGCTCTGCCATTTTGGTTGCATGATATTCCCGGTATTATTTTTAGATCAGATAATGAGCCATTCAAGTTTCACATGAGAAATTTTACCGCCAAGATAGTCAACATGATGAAATCAGCCAACCTTTATGCTTCACAAGGAGGGCCCATCATACTATCACAGATTGAAAATGAGTACAGTACGGTTGAAAGGGCGTTTCACGAGAGAGGACTCACTTATATTCGTTGGGCTGCACAAATGGCTGTGGAACTCCAAACCGGTGTGCCTTGGATAATGTGCAAGCAAGATGATGCTCCTGATCCTGTGATCAACACATGCAATGGTCTGACATGCGGGGAAACATTTAAGGGGCCTAACTCTCCTAACAAGCCTTCACTATGGACAGAGAACTGGACATCTCAatatCCAGCCTTTGGTGAAGAAACGCGCTTAAGATCAGCTGAAGACATTGCATATAATGTTGCCTTGTTCATTGCAAAGAATGGAAGCTATGTCAACTACTACATGTACCATGGGGGGACCAATTTTGACAGAACAGCTTCTGCTTTTGTAACAACAGCTTATTATGATGATGCTCCACTAGATGAGTATGGTTTGGTTAGGCAGCCAAAATGGGGGCATCTAAAGGAGCTACATGCTGCAATTAAGTCTTGCTCAGAGCCTTTACTGTATGGAACACAAACTATATTCAACTTGGGTACACAACAAGAAGCTTATGTTTTCAGAAAGAACTCAACAGTTTGTGCTGCCTTCTTGGAAAATAGTGCTTATAGAGATGCCACAATCCAATTTCAAAATGTTACATATCAGTTACCCCGACAATCATTCAGTATCCTACCAGACTGCAAGAATGTTGCCTTCAACACAGCAAAGGTAAACACACAATATAATATCAGGGCAATGCAATCGCAGTTAAAGTTCAGTTTAACTGAAAAGTGGAAAGTACACAAAGAAGCCATCCCTAGCTATGATGATACTTcattaagagaaaacaaaatattggaTCATTTGAGCACGGCAAAAGATACTTCTGACTATCTATGGTACACTTACAGCATACATGCTGACGCTCCTAATGCTCAATCAGTTCTTAGTGTATTCAGCAGAGGACATGTTTTGTATGCATTTGTCAATGAAGAATTAGTAGGTTCTGCTCATGGCAGTCACAAAAATACAGATTGCAACCTGGAGATCAAGATCAATTTGAGAAAGGGGAAGAATGGTATTTCCTTACTCAGTGCAACAGTTGGATTGCCGGATTCAGGAGCATACCTAGAGCACAGAACAGCTGGTTTGTATAAGGTGACAGTTGATGGCAGAGATCTCACTTCTCAATCATGGGGATATCAGgttGGGTTGTTAGGAGAAAAATTGCAAATATATACAGCCATTGGATCGAGTATAGTTCACTGGGAATATCTTGGAAACTCTACTAATCCACTCACATGGTATCAGTCTATTCAATTAAGTTGGGACCACATTGATGCACCAGCAGGTAACGATCCTGTAGCACTTAACCTTGGTTCAATGGGAAAGGGTCAAGCTTGGGTTAATGGCCAAAACATTGGCCGTTATTGGGTATCTTTTCACACACCAAAGGGGACTCCTTCACAGCAATGGTATCACATACCCCGATCTTTCTTGAAACCTGCCGGGAACCTTATAGTTCTACTCGAGGAAGAAACTGGAAACCCACTGGGGATAACTCTGGACACAGTTGTTTACAACTTTACACTATGGTGA 2151 0.4161 MKLQDLMVYMMMKLLMGCWCSLALLLMLAFGTAHGGNVTYDRRSLIIDGQYRILFSGSIHYPRSTPEMWPDLIAKAKEGGLDVIQTYVFWNLHEPQKGQYDFSGRRDLVRFIKEVQGQGLHLTLRIGPFIESEWTYGALPFWLHDIPGIIFRSDNEPFKFHMRNFTAKIVNMMKSANLYASQGGPIILSQIENEYSTVERAFHERGLTYIRWAAQMAVELQTGVPWIMCKQDDAPDPVINTCNGLTCGETFKGPNSPNKPSLWTENWTSQYPAFGEETRLRSAEDIAYNVALFIAKNGSYVNYYMYHGGTNFDRTASAFVTTAYYDDAPLDEYGLVRQPKWGHLKELHAAIKSCSEPLLYGTQTIFNLGTQQEAYVFRKNSTVCAAFLENSAYRDATIQFQNVTYQLPRQSFSILPDCKNVAFNTAKVNTQYNIRAMQSQLKFSLTEKWKVHKEAIPSYDDTSLRENKILDHLSTAKDTSDYLWYTYSIHADAPNAQSVLSVFSRGHVLYAFVNEELVGSAHGSHKNTDCNLEIKINLRKGKNGISLLSATVGLPDSGAYLEHRTAGLYKVTVDGRDLTSQSWGYQVGLLGEKLQIYTAIGSSIVHWEYLGNSTNPLTWYQSIQLSWDHIDAPAGNDPVALNLGSMGKGQAWVNGQNIGRYWVSFHTPKGTPSQQWYHIPRSFLKPAGNLIVLLEEETGNPLGITLDTVVYNFTLW 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2291 716 Pfam Beta-sandwich domain in beta galactosidase 358 428 IPR041392 -
Ssu6g2291 716 PANTHER BETA-GALACTOSIDASE 20 710 - -
Ssu6g2291 716 SUPERFAMILY Galactose-binding domain-like 582 711 IPR008979 -
Ssu6g2291 716 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 183 195 IPR019801 GO:0004553|GO:0005975
Ssu6g2291 716 PANTHER BETA-GALACTOSIDASE RELATED 20 710 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 Gene3D - 443 585 - -
Ssu6g2291 716 Gene3D - 599 711 - -
Ssu6g2291 716 Pfam Glycosyl hydrolases family 35 44 350 IPR031330 -
Ssu6g2291 716 PRINTS Glycosyl hydrolase family 35 signature 124 143 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 PRINTS Glycosyl hydrolase family 35 signature 181 196 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 PRINTS Glycosyl hydrolase family 35 signature 48 65 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 PRINTS Glycosyl hydrolase family 35 signature 299 314 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 PRINTS Glycosyl hydrolase family 35 signature 262 277 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 PRINTS Glycosyl hydrolase family 35 signature 69 87 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 PRINTS Glycosyl hydrolase family 35 signature 318 334 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 PRINTS Glycosyl hydrolase family 35 signature 648 664 IPR001944 GO:0004553|GO:0005975
Ssu6g2291 716 Gene3D Glycosidases 33 355 - -
Ssu6g2291 716 SUPERFAMILY Galactose-binding domain-like 413 570 IPR008979 -
Ssu6g2291 716 SUPERFAMILY (Trans)glycosidases 35 354 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2291 Ssu-Chr6 51889863 51903779 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2291 11 709 Glycoside Hydrolase AT5G63800 58.815 0.0 872
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2291 - - gmx:100780980 1092.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2291 6 51889863 51903779 Ssu6g2291 6 51889863 51903779 ECH