Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2288 ATGCCACCTTCCCCTTCCTTTCCATCAGaAAACCGAAACAAATGGAGGAAGAGGCGCAAGAGAGAATCCCACAAGCGCCACCAAAAGCGTCACGGCGACGACGACGATTCCAACGACGACAACGAACCCGATGATGACGATTCCGACGACCAATTCCGCAGCCCTAACCCCCAATTCGCGGCGAACCCGAGCCCGTGCGTGGAGATCGAGGCGGTGTCGCTCGACGGAGTCCTGATTTCGCAGTTCCCGCCGGCGATCAAGCGCGTCGTGACCCGCCCCCACCCGGTGGTGGCGGCGATTGTGGCGCTGGAGTCCGGCAACTGCAGGGGGCAGTCGCAGCACGGCGTTCCGGTTCTGGAGAATGTCTCGCACGGCCAGCTTCAGGCGTTGTCGGCGGTGTCCGCCGATTGCCTCGGCAGCGGCTCGAGCTTCGTCGTTGCTCCGCCGCCGGTTTTGAAAGGGTCCGGCGTCGTTAAGCGGTTCGGGAGTAGGGTTCTTGTAGTTCCTATGCATTCAGATTGGTTTTCACCAGCCTTGGTGCATCGACTTGAGAGACAAGCAGTGCCACATTTCTTCTCTGGAAAGTCGCCAGATCATACactggagaagtacatggaatGTAGGAATTACATTGTTGCAAGATACATGGAGGACCCAGGGAAGAGGATTACAATCTCAAGTTGCCAGGGATTGTCAATTGGTGTTGGAAATGAAGATTTAACACGAATTGTCAGGTTCCTTGATCACTGGGGAATTATCAATTACTGTGCTCAGGGCCCAAGTCATAAGTATTCAGACAATGAGACTCGCCTGAAGGAGGAGACCAGTGGTGCAATATGTGTGCCATCAGCGGCTTTAAGATGCATAGATAGCTTGATCGAATTTGACAAGCCCAAGTGTAAATTCAAAGCAGACAAAATTGATTCATTTCGAACAATACACAATACTGATATTTCTGATTTGGATGACAGAATAAGAGAGCATCTATCTGAAAACCATTGCCATTATTGTTCTCGTTCTCTTCCTGTTGTATACTACCAATCACAAAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCACTGGTCATTCTAGTATAGATTTTATAAGGGTGGATTCAACTACAAATTATGGTGATCTAGATGGCGATAGTTGGACTGATCAAGAGACTTTGCTGCTGCTTGAAGCAGTGGAGGTTTACAATGAGAAGTGGAATGAAATTTCTGAGCATGTTGGTACCAAGTCAAAAGCACAGTGCATTCTTCATTTTCTCCGTCTACCTGTGGAAGATGGAAAGTTGGAAAATATCAATGTTTCAAGCTTGTCTTCGTCATCCAATGTGAAGAATCCAGATGATAATGGAAGATTGCATTGTTACTCGAATGGGGATTCTGCAGGACCTGTACATTACAGCCGAGATTCTGATGGCAGGCTTCCTTTTGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCCTCTGCTGTTGGACCAAGAGTAGCTGCAACTTGTGCTCATGCAGCACTAGCTGCATTGTCAGAGAATAATTCTGGGAGCACGTCACATATTGAAGCACTGGAAAATGATGATAGGACGAATTCAGAAAGCATACATAATAGAGATGGTGGCCATCATGGAGAGGTTGCAAATTCAAATCAGAAAAATGAGGACAACACAAAAATACTTGGTTCGCAGGCTCAAAACGAGGGTGGGTCAACCCTGCTATCTGCTGAGAAAGTCAAAGATGCTGCTAAAGCAGGTCTCTCTGCTGCAGCAAGGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGAGAAATTCAGAGGCTTTGTgctaatattgttaataataagTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAAAGAATGTGAACAAGTTGAGAAAGTGAGACAGAGGTATGCTTCTGAGCGGTCCCATGTTGTATCAGCACGTCTTGGAAATGGTGGAACCACTCCTCCAATGAATGTAGCAGGTGTTGGTCCATCCATGGTTAACAATAACAACAGTAGGCAACAAATGATCTCTGCTTCTTCCTCACAGCCTAGCATCTCAGGTTATGGCAACAGCCAACCAGTTCATCCACACATGTCCTTTGTCCCCCGGCCTTCAATGTTTGGATTGGGGCAAAGGTTGCCCCTTTCTATGATACAACAATCACTGTCAGCTTCTTCAAATCCGATGTTCAATGGCCCCGGTAATGTGCAGCATACTCCCAATCATTTGATGTAG 2304 0.4609 MPPSPSFPSENRNKWRKRRKRESHKRHQKRHGDDDDSNDDNEPDDDDSDDQFRSPNPQFAANPSPCVEIEAVSLDGVLISQFPPAIKRVVTRPHPVVAAIVALESGNCRGQSQHGVPVLENVSHGQLQALSAVSADCLGSGSSFVVAPPPVLKGSGVVKRFGSRVLVVPMHSDWFSPALVHRLERQAVPHFFSGKSPDHTLEKYMECRNYIVARYMEDPGKRITISSCQGLSIGVGNEDLTRIVRFLDHWGIINYCAQGPSHKYSDNETRLKEETSGAICVPSAALRCIDSLIEFDKPKCKFKADKIDSFRTIHNTDISDLDDRIREHLSENHCHYCSRSLPVVYYQSQKEVDILLCTDCFHDGRFVTGHSSIDFIRVDSTTNYGDLDGDSWTDQETLLLLEAVEVYNEKWNEISEHVGTKSKAQCILHFLRLPVEDGKLENINVSSLSSSSNVKNPDDNGRLHCYSNGDSAGPVHYSRDSDGRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALAALSENNSGSTSHIEALENDDRTNSESIHNRDGGHHGEVANSNQKNEDNTKILGSQAQNEGGSTLLSAEKVKDAAKAGLSAAARKAKLFADHEEREIQRLCANIVNNKLKRLELKLKQFAEIETQLMKECEQVEKVRQRYASERSHVVSARLGNGGTTPPMNVAGVGPSMVNNNNSRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSLSASSNPMFNGPGNVQHTPNHLM 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2288 767 ProSiteProfiles Zinc finger ZZ-type profile. 329 383 IPR000433 GO:0008270
Ssu6g2288 767 Pfam Myb-like DNA-binding domain 391 433 IPR001005 -
Ssu6g2288 767 Pfam SWIRM-associated region 1 595 668 IPR032451 -
Ssu6g2288 767 SMART sant 388 436 IPR001005 -
Ssu6g2288 767 ProSiteProfiles Myb-like domain profile. 384 434 IPR001005 -
Ssu6g2288 767 MobiDBLite consensus disorder prediction 13 27 - -
Ssu6g2288 767 Gene3D - 172 259 IPR036388 -
Ssu6g2288 767 SUPERFAMILY Homeodomain-like 389 442 IPR009057 -
Ssu6g2288 767 MobiDBLite consensus disorder prediction 748 767 - -
Ssu6g2288 767 Coils Coil 620 647 - -
Ssu6g2288 767 MobiDBLite consensus disorder prediction 536 564 - -
Ssu6g2288 767 SUPERFAMILY Homeodomain-like 165 259 IPR009057 -
Ssu6g2288 767 ProSiteProfiles SANT domain profile. 387 438 IPR017884 -
Ssu6g2288 767 ProSiteProfiles SWIRM domain profile. 166 264 IPR007526 GO:0005515
Ssu6g2288 767 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 60 765 - -
Ssu6g2288 767 MobiDBLite consensus disorder prediction 1 63 - -
Ssu6g2288 767 PANTHER SWI/SNF COMPLEX-RELATED 60 765 - -
Ssu6g2288 767 CDD SANT 391 433 IPR001005 -
Ssu6g2288 767 Gene3D - 388 438 - -
Ssu6g2288 767 MobiDBLite consensus disorder prediction 536 560 - -
Ssu6g2288 767 Pfam SWIRM domain 169 255 IPR007526 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2288 Ssu-Chr6 51793912 51799708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2288 334 430 EF-hand Containing Proteins AT3G07740 31.132 6.47e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2288 K11649 - gmx:732600 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2288 6 51793912 51799708 Ssu6g2288 6 51793912 51799708 ECH