Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2264 ATGTGTCGCCTAACACCCGGTGACTTGCAGCGGATTTTTGAGAAGCTGGACATGAATTGCGATGGGTTTTTGAGCCTTGAGGAGCTGAACGTGCTGCTAGAGAAGACGGGCTTCAATTACAGCATAGAGGAATTAGAATCTCTAGTGGGAAAGAAGAGCCTCGACTTCAGTGAGTTCTTGTTCTTTTACGACTCCATGTTGAAGCAGAAccatggggaagaagaaggggCTAATAATGGGGTCGACGGTGATGAGGTTGAGGAGGTGGAGGGGGACCTCGTGAAGGCTTTCAAGGTGTTTGATTTGGATGGGGATGGATTCATCACCAGCCAAGAGCTGGAGTGCGTGTTGAAGAGGCTTGGCATGTGGGACGAACGGTGTGGCAAGGATTGCGCAACCATGATCTGCTCCTACGACACTAATTTTGACGGCAAGCTTGATTTCCAGGAATTTAAGGACATGATGCTGCTCACAACTTCGTGA 483 0.4679 MCRLTPGDLQRIFEKLDMNCDGFLSLEELNVLLEKTGFNYSIEELESLVGKKSLDFSEFLFFYDSMLKQNHGEEEGANNGVDGDEVEEVEGDLVKAFKVFDLDGDGFITSQELECVLKRLGMWDERCGKDCATMICSYDTNFDGKLDFQEFKDMMLLTTS 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2264 160 Pfam EF hand 9 32 IPR002048 GO:0005509
Ssu6g2264 160 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Ssu6g2264 160 SUPERFAMILY EF-hand 8 156 IPR011992 -
Ssu6g2264 160 Pfam EF-hand domain pair 94 155 IPR002048 GO:0005509
Ssu6g2264 160 ProSiteProfiles EF-hand calcium-binding domain profile. 126 160 IPR002048 GO:0005509
Ssu6g2264 160 CDD EFh 92 155 IPR002048 GO:0005509
Ssu6g2264 160 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 160 - -
Ssu6g2264 160 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Ssu6g2264 160 Gene3D - 66 159 - -
Ssu6g2264 160 Gene3D - 7 64 - -
Ssu6g2264 160 SMART efh_1 92 120 IPR002048 GO:0005509
Ssu6g2264 160 SMART efh_1 8 36 IPR002048 GO:0005509
Ssu6g2264 160 SMART efh_1 130 158 IPR002048 GO:0005509
Ssu6g2264 160 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Ssu6g2264 160 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Ssu6g2264 160 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g2264 Ssu-Chr6 50776433 50776915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2264 4 156 EF-hand Containing Proteins AT1G21550 42.857 2.29e-35 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2264 K13448 - gmx:100500561 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2264 6 50776433 50776915 Ssu6g2264 6 50776433 50776915 ECH