Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g2258 ATGAAAGTGACATGGAAgaacaacaagaagaagaaacgTTGTCTACCCACGTTGTCACACTTCGCTGACCTTCCTTTTGAGCATCATCAACAACACGACCGACCCCATCCACACTCCGACAACGACGCTGAAGATGGCGTGCGTGTTCCCAATCCTGAACAATCCGACGCAACCCAACTGGCTAATGAATTTCAGGCTCTAGGAGACAAGCTTGCTATGATTAACTTCTCTCAAAGTGGATTTGACTTTTCTTGTTTAGCTCTGAGGAAGTACCGGGAAGCACTAGGTAAATGGGAAGCTGCTCTTGCGTTGGCACCTGATGTTCCAGTTTTGCATGAACAAAAGGCCCAAGTTTTACTAGAAATTGGAGATGCTTGGAATGCTTTAAAGGCTGCAACTCGAGCTACTGAATTGGAACCATCATGGGCTGAGGCATGGGTCACACTTGGCAGAGCACAACTGAATTTTGGTGAGCCAGATAATGCTATCAAAAGCTTTGAGCGAGCTTTAGCTCTCAAGCCTGATTATGAGGAAGCTCAAGATGATAGGAAAACTGCATCGCATCTtgtaaagaagagaaaacaactTCACTCATCAGGCCTGAGCGCCACTCGAAATCGATATGTGGTGGGTGATAAGGACGAAAGCTCCTGA 654 0.4388 MKVTWKNNKKKKRCLPTLSHFADLPFEHHQQHDRPHPHSDNDAEDGVRVPNPEQSDATQLANEFQALGDKLAMINFSQSGFDFSCLALRKYREALGKWEAALALAPDVPVLHEQKAQVLLEIGDAWNALKAATRATELEPSWAEAWVTLGRAQLNFGEPDNAIKSFERALALKPDYEEAQDDRKTASHLVKKRKQLHSSGLSATRNRYVVGDKDESS 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g2258 217 ProSiteProfiles TPR repeat region circular profile. 143 175 - -
Ssu6g2258 217 MobiDBLite consensus disorder prediction 28 49 - -
Ssu6g2258 217 PANTHER OSMOSIS RESPONSIVE FACTOR 1 215 - -
Ssu6g2258 217 MobiDBLite consensus disorder prediction 177 217 - -
Ssu6g2258 217 MobiDBLite consensus disorder prediction 28 55 - -
Ssu6g2258 217 Pfam Tetratricopeptide repeat 115 176 - -
Ssu6g2258 217 Gene3D Tetratricopeptide repeat domain 51 206 IPR011990 GO:0005515
Ssu6g2258 217 ProSiteProfiles TPR repeat profile. 143 176 IPR019734 GO:0005515
Ssu6g2258 217 SUPERFAMILY TPR-like 85 193 IPR011990 GO:0005515
Ssu6g2258 217 SMART tpr_5 143 176 IPR019734 GO:0005515
Ssu6g2258 217 SMART tpr_5 109 142 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g2258 87 217 Glycosyltransferase AT3G04240 25.532 2.74e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g2258 - - gmx:100305761 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g2258 6 50594127 50598756 Ssu6g2258 6 50594127 50598756 ECH