Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1705 ATGGAGACGTTGATCGCACTCGTCAACCGAATTCAGCGCGCCTGTACGGTCCTCGGCGACCACGGCGGCGACGCCGCTTTGCCTACTCTCTGGGAAGCTCTTCCCTCCGTCGCCGTCGTCGGCGGCCAGAGTTCTGGAAAGTCTTCGGTGCTGGAGGGCATTGTCGGCCGCGATTTTCTTCCGAGGGGATCAGGGATTGTGACGCGGAGGCCTCTGGTGCTGCAGTTGCACAAAACGGAACAGGGACTACAAGATTATGCGGAGTTCCTGCACTTGCCTAAGAAACGGTTTACTGATTTCTCTATGGTTCGAAAGGAAATTGAAGATGAAACTGATAGACTGACTGGGAAATCAAAACAGATATCTCCTGTTCCTATTCATCTCAGCATCTATTCCCCAAATgTTGTCAATCTAACACTGATCGATCTGCCTGGTTTGACAAAGGTTGCTGTAGagGGACAGTCAGAAAATATTGTTCAAGACATCGAAAACATGATTCACTCATATGTTGACAAGCCTAATTGCTTAATTTTGGCCATTACTCCAGCAAATCAAGATATAGCAACATCAGATGCCATCAAGGTTTCCAGACAAGTTGATCCTGCAGgaGAAAGAACGTTTGGTGTGTTGACAAAGCTTGATTTGATGGACAAAGGAACAAATGCTCGGGATGTCCTTGAGGGAAGATCTTATCGACTTCAAAACCCTTGGGTGGGAATTGTAAACCGTTCTCAGGCAGATATTAATAGGAATGTGGATATGATTGCTGCTCGGAAGCGGGAGCGTGAATTTTTTGCCACCAGTCCTGATTACTCACACTTGGCCAGCCAAATGGGCTCGGAATATCTAGCAAGGCTTCTCTCAAAGCATTTAGAGTCTGTGATAAGAGCTCGGATTCCAGGTATTGCGTCTTTGATTAATAGAAGCATCAATGAGCTTGAAACAGAGTTGGCACGCATTGGTCGACCAGTTGCTGTTGATGCTGGGGCCCAGCTGTACACTATTCTAGAATTATGCCGCTCTTTTGAACGAGTATTTAAGGAGCATTTAGATGgaggGCGACCAGGTGGCGATCGAATTTATGTGGTTTTCGATTACCAGCTTCCTGCTGCATTGAGAAAGCTTCCACTGGACCGTCATTTGTCGttgcaaaatgtgagaaaagtGATTTCAGAGGCAGATGGGTACCAACCTCATCTAATTGCCCCAGAGCAAGGCTACCGACGCCTCCTGGAGAGCTCACTTACTTATTTCAAAGGTCCCGCGCAAGCTTCTGTGGATGCTGTTCATTTCATACTGAAGGAACTCGTGAGAAAGTCAGTTGCAGAAACGCAGGAATTGAAACGGTTTCCAACTCTTCAAGCTGAAATAGCAGCAGCTGCTAATGAGGCATTGGAGAGATTCCGTGAAGACAGTAAGAAGACAACGTTACGGTTGGTGGAAATGGAGTCTTCCTATTTCACCGTTGATTTTTTCCGTAAACTCCCGCAGGAAGTTGACAAGAGAGGGAATCCAGCTCCCTCCGCTGTCGATCAGTATGCCGAGGGACACTTCCAGAGGATCGGTTCAAATGTTTTGTCTTATGTTGGGATGGTGTCAGAAACCTTAAGGAATACCATTCCAAAGGCTGTGGTTCATTGTCAAGTGAGGGAGGCTAAGCGATCTTTACTAGACCATTTTTACGTACAACTGGGCAAAAAGGAGGAAAGGCAACTCTCACAGTTGCTGGACGAAGATTCCGAGTTGATGGAAAGGAGACAGCAATGTGCCAAGAGGCTGGAGTTATATATGTCAGCAAGGGATGAGATTGAAGCAGTTTGTTGGTCGGGATAA 1833 0.4621 METLIALVNRIQRACTVLGDHGGDAALPTLWEALPSVAVVGGQSSGKSSVLEGIVGRDFLPRGSGIVTRRPLVLQLHKTEQGLQDYAEFLHLPKKRFTDFSMVRKEIEDETDRLTGKSKQISPVPIHLSIYSPNVVNLTLIDLPGLTKVAVEGQSENIVQDIENMIHSYVDKPNCLILAITPANQDIATSDAIKVSRQVDPAGERTFGVLTKLDLMDKGTNARDVLEGRSYRLQNPWVGIVNRSQADINRNVDMIAARKREREFFATSPDYSHLASQMGSEYLARLLSKHLESVIRARIPGIASLINRSINELETELARIGRPVAVDAGAQLYTILELCRSFERVFKEHLDGGRPGGDRIYVVFDYQLPAALRKLPLDRHLSLQNVRKVISEADGYQPHLIAPEQGYRRLLESSLTYFKGPAQASVDAVHFILKELVRKSVAETQELKRFPTLQAEIAAAANEALERFREDSKKTTLRLVEMESSYFTVDFFRKLPQEVDKRGNPAPSAVDQYAEGHFQRIGSNVLSYVGMVSETLRNTIPKAVVHCQVREAKRSLLDHFYVQLGKKEERQLSQLLDEDSELMERRQQCAKRLELYMSARDEIEAVCWSG 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1705 610 SMART GED_2 513 606 IPR003130 GO:0003924|GO:0005525
Ssu6g1705 610 ProSiteProfiles GED domain profile. 518 610 IPR020850 -
Ssu6g1705 610 Pfam Dynamin central region 221 488 IPR000375 -
Ssu6g1705 610 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 60 69 IPR019762 -
Ssu6g1705 610 Gene3D - 1 309 IPR027417 -
Ssu6g1705 610 PANTHER - 2 609 - -
Ssu6g1705 610 PRINTS Dynamin signature 224 243 IPR022812 -
Ssu6g1705 610 PRINTS Dynamin signature 201 217 IPR022812 -
Ssu6g1705 610 PRINTS Dynamin signature 132 149 IPR022812 -
Ssu6g1705 610 PRINTS Dynamin signature 182 200 IPR022812 -
Ssu6g1705 610 PRINTS Dynamin signature 59 76 IPR022812 -
Ssu6g1705 610 PRINTS Dynamin signature 34 52 IPR022812 -
Ssu6g1705 610 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 31 300 IPR030381 GO:0005525
Ssu6g1705 610 Gene3D Dynamin, middle domain 333 586 - -
Ssu6g1705 610 PANTHER DYNAMIN 2 609 IPR022812 -
Ssu6g1705 610 CDD DLP_1 34 300 IPR001401 GO:0003924|GO:0005525
Ssu6g1705 610 Pfam Dynamin family 37 212 IPR045063 -
Ssu6g1705 610 Pfam Dynamin GTPase effector domain 515 606 IPR003130 GO:0003924|GO:0005525
Ssu6g1705 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 307 IPR027417 -
Ssu6g1705 610 SMART dynamin_3 1 251 IPR001401 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1705 Ssu-Chr6 28730451 28736210 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1705 - - pvu:PHAVU_003G228100g 1070.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1705 6 28730451 28736210 Ssu6g1705 6 28730451 28736210 ECH