Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1700 ATGCCTCACCCACCACCCACCAACCTCGAAGATCTTGTGGGCATGTCAATTCAGCTAACCAAATCCAACAGAACCAACATGGTTTCCATTGTTTCAAAGCTCTTGAAGAACAAAAGTTTTGATCAATACATAAAAAGTTGCCTACAAAGTTGCTTTGAtctttactctttttccttttcgaCTTTAGATGGTGCTGTGGTTGCTTTCAAGTCCAAGGATTTTGACACAACTAGGGTAAAAGTGAGCGGTGGCTTGGCTTGCCCAATTACCTGTGAAGATCAGTTCAACAATAAGAAAGTTGAAACTTCTCCTTTAAAAAAGGAGAACCGCATGTACTTCTAA 342 0.3801 MPHPPPTNLEDLVGMSIQLTKSNRTNMVSIVSKLLKNKSFDQYIKSCLQSCFDLYSFSFSTLDGAVVAFKSKDFDTTRVKVSGGLACPITCEDQFNNKKVETSPLKKENRMYF 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1700 113 Gene3D Invertase/pectin methylesterase inhibitor family protein 1 113 IPR035513 -
Ssu6g1700 113 SMART PMEI_2 2 113 IPR006501 GO:0004857
Ssu6g1700 113 CDD PMEI-Pla_a_1_like 6 113 IPR034088 -
Ssu6g1700 113 PANTHER PECTINESTERASE INHIBITOR-LIKE 9 113 - -
Ssu6g1700 113 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR SUPERFAMILY PROTEIN 9 113 - -
Ssu6g1700 113 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 6 112 IPR035513 -
Ssu6g1700 113 TIGRFAM PME_inhib: pectinesterase inhibitor domain 5 112 IPR006501 GO:0004857
Ssu6g1700 113 Pfam Plant invertase/pectin methylesterase inhibitor 8 110 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1700 Ssu-Chr6 28699595 28699936 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1700 - - gmx:100817110 161.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1700 6 28699595 28699936 Ssu6g1700 6 28699595 28699936 ECH