Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1698 ATGTGCTCTATCAACACGCCTCCGACATTGCGCACCTACTCGTCCGCCTCCACCATCGCCCTGCTTGGCCAAGTGGCGGCATTGCCTCCTGCACACCTTGTTGACGCACTTCGCCGCATTCGCGACTTCTACATAGAGAGCTACTTCCACTTCGAAAGCTCGTCATCCCCTAACGACAACCTTTGCATAGACACCACCCTCGCTAGCTTCGATGGCCTCAAAATCCATAGCAATAGCTGCACCTTTGAATTTCAAAAACGAAGTTTCAAGCCTTTTGACAATCAATTTGCCATGATCAAGTCGCAGGAGTCTTGGTGTCTAAGGGCATTTCACACCGAGTTGCAACACATGGCCGAATCGGTGGAGCTCCCGAGTCGCCTGGCGATTCTCCCTTTCAGGAACAAAGTCCTCTTACCCGGCGCCATCATCAGAATCCGCTGCACTTCCCCCACCAGTGTGAAATTGGTGGAGCAAGAACTTTGGCAGCGAGAAGAGAAGGGGTTGATTGGCATCCTGCCAGTGCGAACTGATTCTACAAACCAGAACTCAAAAGTTCAAGGCGGTTCATTGGATTCTCGTAAGCTTGATACAAAAAAGCAGAATGATGTTGTTCATTGGCATAACAGGGGGGTAGCTGCCCGACCATTACATTTATCAAGGGGAGTGGAGAAACCAAGTGGGAGGGTCACATACACAGTTGTTCTTGAAGGTTTGTGCAGATTTAGTGTCCAGGAACTGAGCACAAGAGGAATATACCATACTGCGAGGATAACTTCCCTTGAAATGACCAAGACTGAGCTGGAACAAGTGGAGCAAGACCCAGATTTCATAATGTTGTCTCGCCAATTTAAAGCTACTTCTATGGAGCTTATTTCTGTTTTGGAGCTGAAACAAAAAACTGGTGGAAGGACAAAAGTCCTTTTGGACAACGTTCCAGTTCACAAGTTGGCTGATATATTTGTtgctagttttgagataagttTTGAAGAACAATTATCTATGCTGGATTCAGTTGACCCCAAAGTGAGGCTTTCAAAAGCAACTGAGTTAGTTGACAGGCATTTACAGTCAATACGTGTAGCTGAGAAAATTACACAAAAGGTTGAAGGACAATTGTCAAAATCTCAAAAAGAATTTCTTTTGCGCCAGCAGatgaGGGCGATAAAAGAGGAACTTggtgataatgatgatgatgaggatgacTTGGCTGCCCTCGAAAGAAAGATGCAGAGTGCAGGAATGCCACAGAATATATGGAAACATGCACATAGAGAGTTGAGGAGGCTTAAAAAAATGCAGCCTCAGCAACCAGGGTATAACAGTTCACGGGTTTACCTAGAGCTTCTTGCTGATCTGCCCTGGCAGAAGGCCAGTGAAGAGATTGAACTGGACTTAAGAGCTGCACAGAAGCGACTGGACAGTGATCACTATGGTTTAGTGAAAGTTAAGCAACGGATAATTGAATACCTGGCGGTTCGCAAGCTTAAACCAGATGCAAGGGGTCCTGTGTTGTGCTTAGTTGGACCACCAGGTGTTGGGAAAACATCATTGGCATCTTCTATTGCTGCTGCTTTGGGAAGAAAATTTGTGCGCATATCCCTTGGTGGAGTCAAGGATGAGGCTGATATTAGAGGACATAGGAGAACATATGTTGGAAGCATGCCTGGGCGGCTTATAGATGGATTAAAGAGAGTAGCTGTTTGCAATCCCGTCATGTTGCTTGATGAAGTTGACAAGACAGGTTCTGATATTCGTGGAGATCCAGCTTCAGCATTGCTAGAGGTTCTTGATCCAGAACAAAATAAATCGTTCAATGATCACTATTTGAATGTGCCATTTGATCTATCCAAGGTAGTTTTTGTGGCTACAGCAAATAGAATGCAACCCATTCCTCCACCACTTCTTGATAGGATGGAAGTAATTGAGCTTCCTGGATATACTCCTGAGGAAAAGCTCCACATAGCCATGCAGCATTTGATTCCAAGAGTTTTAGACCAGCATGGATTGAGTTCTGAGTTTCTTCAGATTCCAGAGGCAATGGTGAAGCTTGTCATTCAGAGATATACTAGGGAAGCTGGTGTGCGAAATTTGGAGAGGAATCTGGCTGCCTTGGCTCGAGCTGCTGCAGTAAGAGTTTTAGAGCAAGAACAAGTAATTCCATTAAACAAAGGGATGCAGGGACTTGCTACACCACTTGTGGAAAACAGACTCGCGGATGGAACTGAAGTTGAATTGGAAGTGATACCAATGGGTGTCAATAGTCGGGACATCTCAAACACGTTCAGGATTGCCTCTCCATTGGTTGTTGATGAAACTATGCTTGAAAAAGTGCTTGGGCCCCCAAGATTTGATGGTAGAGAAGCTGCAGAGCGAGTGGCTACCCCTGGGGTCTCTGTTGGGCTAGTTTGGACTGCTTTTGGTGGAGAAGTTCAGTTTGTGGAGGCTACAGCAATGGTTGGGAAGGGCGAACTGCATCTCACTGGACAACTTGGTGATGTAATAAAAGAATCAGCTCAGATTGCTCTAACATGGGTAAGGGCAAGGGCAACTGATCTTAGGCTGGCTGCTACAGAGGGATTTAATCTTTTGGAGGGTCGTGATGTACACATACATTTTCCTGCGGGTGCTGTACCTAAAGATGGGCCCTCAGCAGGTGTGACTTTGGTCACGGCATTGGTATCACTTTTCAGTCAGCAAAGGATGAGATCAGACACGGCTATGACTGGAGAGATGACATTGAGGGGTCTTGTTCTGCCTGTTGGTGGTGTCAAGGATAAGATATTAGCTGCACATCGTTATGGTATTAAGAGAGTTATCCTGCCTGAAAGGAACTTGAAGGACTTGGTTGAAGTACCATCGTCAGTGCTAGCCAATTTGGAGATCTTGCTTGCTAAACGAATGGAAGATGTGTTAGAGCATGCTTTTGACGGTGGTTGCCCTTGGAAGCAACACTCAAAGTTATAG 2964 0.4507 MCSINTPPTLRTYSSASTIALLGQVAALPPAHLVDALRRIRDFYIESYFHFESSSSPNDNLCIDTTLASFDGLKIHSNSCTFEFQKRSFKPFDNQFAMIKSQESWCLRAFHTELQHMAESVELPSRLAILPFRNKVLLPGAIIRIRCTSPTSVKLVEQELWQREEKGLIGILPVRTDSTNQNSKVQGGSLDSRKLDTKKQNDVVHWHNRGVAARPLHLSRGVEKPSGRVTYTVVLEGLCRFSVQELSTRGIYHTARITSLEMTKTELEQVEQDPDFIMLSRQFKATSMELISVLELKQKTGGRTKVLLDNVPVHKLADIFVASFEISFEEQLSMLDSVDPKVRLSKATELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDNDDDEDDLAALERKMQSAGMPQNIWKHAHRELRRLKKMQPQQPGYNSSRVYLELLADLPWQKASEEIELDLRAAQKRLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCLVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYVGSMPGRLIDGLKRVAVCNPVMLLDEVDKTGSDIRGDPASALLEVLDPEQNKSFNDHYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLHIAMQHLIPRVLDQHGLSSEFLQIPEAMVKLVIQRYTREAGVRNLERNLAALARAAAVRVLEQEQVIPLNKGMQGLATPLVENRLADGTEVELEVIPMGVNSRDISNTFRIASPLVVDETMLEKVLGPPRFDGREAAERVATPGVSVGLVWTAFGGEVQFVEATAMVGKGELHLTGQLGDVIKESAQIALTWVRARATDLRLAATEGFNLLEGRDVHIHFPAGAVPKDGPSAGVTLVTALVSLFSQQRMRSDTAMTGEMTLRGLVLPVGGVKDKILAAHRYGIKRVILPERNLKDLVEVPSSVLANLEILLAKRMEDVLEHAFDGGCPWKQHSKL 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1698 987 Gene3D - 465 643 IPR027417 -
Ssu6g1698 987 SMART lon_5 126 353 IPR003111 -
Ssu6g1698 987 Gene3D - 794 980 IPR014721 -
Ssu6g1698 987 Gene3D - 644 783 - -
Ssu6g1698 987 Pfam ATPase family associated with various cellular activities (AAA) 504 641 IPR003959 GO:0005524|GO:0016887
Ssu6g1698 987 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 795 811 - -
Ssu6g1698 987 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 877 896 - -
Ssu6g1698 987 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 907 926 - -
Ssu6g1698 987 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 930 948 - -
Ssu6g1698 987 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 508 527 - -
Ssu6g1698 987 ProSiteProfiles Lon N-terminal domain profile. 127 353 IPR003111 -
Ssu6g1698 987 TIGRFAM lon: endopeptidase La 129 975 IPR004815 GO:0004176|GO:0005524|GO:0006508
Ssu6g1698 987 Pfam ATP-dependent protease La (LON) substrate-binding domain 127 353 IPR003111 -
Ssu6g1698 987 SUPERFAMILY Ribosomal protein S5 domain 2-like 795 975 IPR020568 -
Ssu6g1698 987 Coils Coil 388 408 - -
Ssu6g1698 987 Gene3D - 110 261 IPR046336 -
Ssu6g1698 987 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 117 987 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Ssu6g1698 987 Gene3D - 275 396 - -
Ssu6g1698 987 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 119 987 IPR027501 GO:0004252|GO:0006515
Ssu6g1698 987 Gene3D - 404 452 - -
Ssu6g1698 987 ProSiteProfiles Lon proteolytic domain profile. 792 977 IPR008269 GO:0004176|GO:0004252|GO:0006508
Ssu6g1698 987 Pfam Lon protease (S16) C-terminal proteolytic domain 769 975 IPR008269 GO:0004176|GO:0004252|GO:0006508
Ssu6g1698 987 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 452 719 IPR027417 -
Ssu6g1698 987 SMART AAA_5 500 645 IPR003593 -
Ssu6g1698 987 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 880 888 IPR008268 GO:0004176|GO:0004252|GO:0006508
Ssu6g1698 987 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 117 987 - -
Ssu6g1698 987 CDD AAA 485 646 - -
Ssu6g1698 987 SUPERFAMILY PUA domain-like 126 352 IPR015947 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1698 Ssu-Chr6 28669285 28683416 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1698 K01338 - gmx:100789982 1620.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1698 6 28669285 28683416 Ssu6g1698 6 28669285 28683416 ECH