Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1692 ATGGATCAGTTGTCGGCGATCAGCGAGGACCTGGCCGAGATCGACGGACACATCGCCGACAATTTCCGCGCCTTATCAAATGGATTTCAGAAGTTGGAGAAGATTAAGGATTCGAATAGACAGAGCAGGCAGTTGGAAGAACTCACAGAAAAAATGCGAGAATGTAAACGGCTTATTAAGGAGTTCGACAAAGAAGCCAAAGCTTTGGAGAGTAGCTTTGATAGAGAAACCAACAAAATGTTGAATGAGAAAAAACAGGCAATGATCAAAGAATTAAACTCATATGTTGCTTTGAAAAAGCAGTATGCTACAAATATTGAGCATAAACGAATTGAACTCTTTGAGGGACCCAATGAAGGTTATGCAGAAGAAAATGGCTTGCTAGCATCCTCAATGACAAACGAACAGCTAATGGATCATGGGAATCAGATGATGGATGAGACAGATCAAGCCATTGAAAGAGGAAAGAAGGTAGTTCAAGACACAATAAATGTTGGTACAGAGACTGCTGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTTGTCAATGAGCTGGATTCGATCCATTTCTCTATAAAGAAAGCCTCTCAATTGGTCAAGGAAATCGGTAGGCAGGTTGCTACTGACAAGTGTATTATGGCGCTACTTTTCCTTATCGTCATTGGAGTAATTGCTATCATTATTGTCAAGCTTGTGCACCCAAACAACAAGGACATTCGCGACATTCCAGGATTAGCTCCTCCAGTCATGAACCGAAGACTGCTTTGGAGCCACAGTTGA 786 0.4224 MDQLSAISEDLAEIDGHIADNFRALSNGFQKLEKIKDSNRQSRQLEELTEKMRECKRLIKEFDKEAKALESSFDRETNKMLNEKKQAMIKELNSYVALKKQYATNIEHKRIELFEGPNEGYAEENGLLASSMTNEQLMDHGNQMMDETDQAIERGKKVVQDTINVGTETAAALKAQTEQMSRVVNELDSIHFSIKKASQLVKEIGRQVATDKCIMALLFLIVIGVIAIIIVKLVHPNNKDIRDIPGLAPPVMNRRLLWSHS 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1692 261 SMART tSNARE_6 137 204 IPR000727 -
Ssu6g1692 261 CDD SNARE_SNAP25N_23N_29N_SEC9N 139 203 IPR044766 GO:0005484|GO:0031201
Ssu6g1692 261 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 142 204 IPR000727 -
Ssu6g1692 261 PANTHER NOVEL PLANT SNARE 11 1 250 - -
Ssu6g1692 261 Coils Coil 38 79 - -
Ssu6g1692 261 Gene3D - 133 212 - -
Ssu6g1692 261 SUPERFAMILY SNARE fusion complex 132 205 - -
Ssu6g1692 261 Pfam Sec20 150 231 IPR005606 GO:0005484|GO:0006890
Ssu6g1692 261 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1692 Ssu-Chr6 28465896 28470013 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1692 K08494 - gmx:100786429 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1692 6 28465896 28470013 Ssu6g1692 6 28465896 28470013 ECH