Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1688 ATGCATCACCACCATAAGCCCGAGCTTCACATCGGAAAAGAGAACTTGCACCTCTCTTCTGATACCACTTCAACTCCACTTCCCTTCTCTCCCAACCAAAACCAAACACAAACGCAAACCCATTCCTCAATTCAAGTTTCACCCTCTTCacaccatccaccaccaccaaacTCACCAAACATTCCGTGTCACCATGAACGCTTCTCCGACAACCCGTCTCAAACCCCACCCCACAATAGATTGCCTATAATGACCCTCCCTTACCCTTTGTTCCCAACACCCTTTGGCGCAAAGTTTCTAACTTCAAAGCTTCTCCCCCGTTTCCGTCTTCTCATCCTCCTCCCGCTCCCCTCTCTCTACTTCCTCTTTTCAAACCCTAGCCCTTTAGATTTCTTCTCCGTGATCGCTTTCTCAGCAGCACTCTTCATTTCCCTCAATTTTGCAATCCCCCGTTTACACTCTATTCGCTTGTACTTCACTCGATCATCATggtcatcttcttcttcttcttccccttCTCCTCACCCTGTGGTATGGTCCATTGGGTCAAAGCCCAAGCAAGTGAAGAACTTAAGTTGGGGGTGTTGGGTGCAGGTTTATAGCAATGGGGACGTGTACGAGGGTGAATTCCAGAAGGGGAAGTgttgggggagtggggtgtatCACTATCACATGAATGGGAGGTATGAGGGGGATTGGGCTGATGGGAAGTATGATGGGTATGGTGTTGAGACGTGGGCTAGAGGGAGCAGGTATAGGGGACAGTATAGGGAGGGTTTGAGGCATGGAATGGGGATCTATAGGTTCTACAGTGGGCATGTGTATGGTGGTGAGTGGTCTAATGGGCAGTGTCATGGGTTTGGAGTCCACACTTGCAATGATGGGAGCCGCTATGTTGGGGAGTTCAAATGGGGTGTCAAACATGGACTCGGACAGTACCATTTCAgGAACTGTTGTGTGCATCTGATTCAAGCctattgtattttctttttaagaaagCATTGGTGTTTCTGTGGGCAAAAGTTTAGAAATATGTTCATCTGGCCTGGAGAAGTATGTGTCAGAGCATTGTTGGAGCCAATATGTCAATGCTTCAATTATGACTTCATAAATTTACCCATGTCAGAAATGGGGACATATATGCTGGAGAATATTTTGCAGACAAGATGCATGGTTTTGGGGTGTATCAATTTCAGAATGGTCATCAGTATGAGGGGGCCTGGCATGAAGGAAGAAGACAAGGACTGGGAATGTACACTTTCAGAAATGGGGGAACACAATGTGGTCACTGGCAGAATGGGATTCTTGATGATCCTAAAAGACATAATAGTCCTAAAAGGTCTCCATGTGTTGTGGACCATGCCAAGGTTTTCAATGCAATACAGGATGCACATTATGCTGCTGAGAAAGCTTACAACATGGCAAAGGTGGATGACGGGGTGA 1443 0.438 MHHHHKPELHIGKENLHLSSDTTSTPLPFSPNQNQTQTQTHSSIQVSPSSHHPPPPNSPNIPCHHERFSDNPSQTPPHNRLPIMTLPYPLFPTPFGAKFLTSKLLPRFRLLILLPLPSLYFLFSNPSPLDFFSVIAFSAALFISLNFAIPRLHSIRLYFTRSSWSSSSSSSPSPHPVVWSIGSKPKQVKNLSWGCWVQVYSNGDVYEGEFQKGKCWGSGVYHYHMNGRYEGDWADGKYDGYGVETWARGSRYRGQYREGLRHGMGIYRFYSGHVYGGEWSNGQCHGFGVHTCNDGSRYVGEFKWGVKHGLGQYHFRNCCVHLIQAYCIFFLRKHWCFCGQKFRNMFIWPGEVCVRALLEPICQCFNYDFINLPMSEMGTYMLENILQTRCMVLGCINFRMVISMRGPGMKEEDKDWECTLSEMGEHNVVTGRMGFLMILKDIIVLKGLHVLWTMPRFSMQYRMHIMLLRKLTTWQRWMTG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1688 480 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 33 321 - -
Ssu6g1688 480 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 229 319 - -
Ssu6g1688 480 MobiDBLite consensus disorder prediction 16 48 - -
Ssu6g1688 480 MobiDBLite consensus disorder prediction 1 79 - -
Ssu6g1688 480 Pfam MORN repeat 277 297 IPR003409 -
Ssu6g1688 480 Pfam MORN repeat 252 273 IPR003409 -
Ssu6g1688 480 Pfam MORN repeat 206 226 IPR003409 -
Ssu6g1688 480 Pfam MORN repeat 229 251 IPR003409 -
Ssu6g1688 480 Pfam MORN repeat 298 317 IPR003409 -
Ssu6g1688 480 PANTHER MORN REPEAT PROTEIN 33 321 - -
Ssu6g1688 480 SMART morn 296 317 IPR003409 -
Ssu6g1688 480 SMART morn 250 271 IPR003409 -
Ssu6g1688 480 SMART morn 227 248 IPR003409 -
Ssu6g1688 480 SMART morn 204 225 IPR003409 -
Ssu6g1688 480 SMART morn 273 294 IPR003409 -
Ssu6g1688 480 Gene3D - 188 235 - -
Ssu6g1688 480 Gene3D - 236 280 - -
Ssu6g1688 480 Gene3D - 281 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1688 Ssu-Chr6 28437532 28441051 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1688 198 317 Acyl Lipid Metabolism Gene Families AT1G60890 35.833 5.73e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1688 - - pvu:PHAVU_003G226200g 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1688 6 28437532 28441051 Ssu6g1688 6 28437532 28441051 ECH