Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1685 ATGGTGCTTCCTTTTACCAAATTCATTCTGTTTCGCAGCCACTTGTTCAGAAAGGTTTCTCCTTTACACAGGATTTTTCAAGGGCATTTCTGCTCTGATCAGTTCAATCCGTTTCTGCAAAAATTTTCCACTTCTGGCCACTGTGAAAGATTATCATGGGAACGTTCCAATGAAGAAATTCTACTGGGGAAGCTTAAACTTGCTTTGAGGAATCACCAGGTGCATGAAGCATGGGAATCCTTTCAGGATTTTAGAAGACTTTATGGTTACCCTGAGGTTCATCTAGTGAACCAGCTCATTGTTCAATTGTCCTATTCTTCCAATCATGTTTGGATGCGAAAAGCTTGTGATTTGGTGTTGCAGATTGTTAAAGGGAACTCAGGTTTACTTCATGCTGATACCTTAACCAAACTTGCACTGTCTCTAGCCAGGTTGCAAATGCCATCCCCTGCCTCAGTGATACTTAGATTGATGCTTGACAAAGGGTGTGTGCCCCCTATGCATTTATTATCCTTGGTTGTTTTTCATATTGTGAAGACAGAAATTGGAACACATCTTGCATCTAATTATCTGTTTCAAGTTTGTGATTTTTACAGTTGTTTGAATGATAAAAAGGCTCACCATGCAGTCACTGTCAAGCCGGATACCTTGGTCTTTAACCTTGTTCTTGATGCCTGTGTGAGGTTTAAATTGTCTTTGAAAGGCCTGTGCCTAATTGAAGTAATGTCGCTGACCGGGACCATGGCTGATGCACACTCGATTGTGATAATTTCACAGATTCTAGAGATGAATGGTTTGAGAGATGAAATGAAGGAATTGAAAGATCATATTGACAGAGTTTCGGCCGCTTATGTTCGTCACTATCGTCAGTTCTATGATAGTTTGTTGAGCTTGCACTTCAAATTTAACGACGTTGATGCTGCTGCTAAGCTTGTTCTGGATATGAGTAGCTCGCATAACTGTAATGTTAATAAAGAATGTGGGAAACATTTGCAAAAGCCTTGCTTTATTGCCATTGGATCTTCTAACCTTAGGACTGCATTAAAGATACATATTGAGCCTGAGCTACTGCATAAGGATTCTGTCCTTAAAGTGGAAAGCAGACAAGATCTTATTTTTTGTAGGGGTGGGAAACTAGTTCTTAGTAATAGAGCTCTGGCTAAGTTCATCAGTGGTTACAAGAAAGATGGGAGGATTGGTGAACTTTCAAAACTTTTACTTTGTATTCAAGGGGAACTATATTCAGTGGCAGGGTCCAGTTTGTGTTCTGATGTAATTGGTGCTTGTATTCAGTTAGGATGGCTTGAGTGTGCTCATGACATTTTGGATGATGTAGAGGCCACTGGATCTCCAATGGGCCGGGATACATATATGTTACTCGTGTCAGCATATTGGAAAGGGGGAATGCAAAGAGAAGCAAAGGCACTACTGAAACGAATGAAAAAGGTTGGTTTGGACAAAGGGTTATCTGATGATGCTCTTGACAAACACAACCTCTGTGAAGAAACATTAAATTTGCTTGGTAAAGCAGATTTGGCTATTGCCTTGGCTCAAATATTGAAAGATGAAGATCAGACAGTTTTTCCTTTGGTGTGTAACTTcaattcttccattttctttttctgcaagGCCAGAATGATAGAGGATGCACTAAGGGCATATAGAAGAATGGTTGCCATGAAAATTCAACCCACAAGTCAAACTTTTGCTTTTTTGATGCGTGGATATTCTTCTCTTGGTATGTACCGTGAGATCACAATCTTGTGGGGAGACATTAAGAGATTCATGAGGAGTGGCAATTTAGTGGGAAATAGAGATATATATGAGTTACTGCTGTTAAACTTTCTTCGAGGTGGTTACTTTGAGAGAGTGATGGAGGTCATTAGCCATATGACAGACCATAACATGTTTACTGACAAGTGGATGTACAAAAGTGAGTTCCTTAGACTTCATAAGAATCTTTATAGGAGTTTAAAAGCATCAAATACGAGAACAGAAGCACAAAGCAAACGGCTTGAGCATGTTCAGGAATTTAGGAAATGGGCGGGTATTGATTAA 2058 0.3926 MVLPFTKFILFRSHLFRKVSPLHRIFQGHFCSDQFNPFLQKFSTSGHCERLSWERSNEEILLGKLKLALRNHQVHEAWESFQDFRRLYGYPEVHLVNQLIVQLSYSSNHVWMRKACDLVLQIVKGNSGLLHADTLTKLALSLARLQMPSPASVILRLMLDKGCVPPMHLLSLVVFHIVKTEIGTHLASNYLFQVCDFYSCLNDKKAHHAVTVKPDTLVFNLVLDACVRFKLSLKGLCLIEVMSLTGTMADAHSIVIISQILEMNGLRDEMKELKDHIDRVSAAYVRHYRQFYDSLLSLHFKFNDVDAAAKLVLDMSSSHNCNVNKECGKHLQKPCFIAIGSSNLRTALKIHIEPELLHKDSVLKVESRQDLIFCRGGKLVLSNRALAKFISGYKKDGRIGELSKLLLCIQGELYSVAGSSLCSDVIGACIQLGWLECAHDILDDVEATGSPMGRDTYMLLVSAYWKGGMQREAKALLKRMKKVGLDKGLSDDALDKHNLCEETLNLLGKADLAIALAQILKDEDQTVFPLVCNFNSSIFFFCKARMIEDALRAYRRMVAMKIQPTSQTFAFLMRGYSSLGMYREITILWGDIKRFMRSGNLVGNRDIYELLLLNFLRGGYFERVMEVISHMTDHNMFTDKWMYKSEFLRLHKNLYRSLKASNTRTEAQSKRLEHVQEFRKWAGID 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1685 685 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Ssu6g1685 685 Gene3D Tetratricopeptide repeat domain 501 683 IPR011990 GO:0005515
Ssu6g1685 685 PANTHER OS07G0495300 PROTEIN 24 685 - -
Ssu6g1685 685 PANTHER BNAC05G43320D PROTEIN 24 685 - -
Ssu6g1685 685 Coils Coil 263 283 - -
Ssu6g1685 685 TIGRFAM PPR: pentatricopeptide repeat domain 541 565 IPR002885 -
Ssu6g1685 685 Pfam PPR repeat 456 484 IPR002885 -
Ssu6g1685 685 Pfam PPR repeat 541 560 IPR002885 -
Ssu6g1685 685 Gene3D Tetratricopeptide repeat domain 187 344 IPR011990 GO:0005515
Ssu6g1685 685 Gene3D Tetratricopeptide repeat domain 372 500 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1685 Ssu-Chr6 28414997 28417054 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1685 204 643 Glycosyltransferase AT1G05670 20.557 2.63e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1685 - - gmx:100812849 1216.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1685 6 28414997 28417054 Ssu6g1685 6 28414997 28417054 ECH