Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1677 ATGGAGGTTGCCACAACAGCTTCTAGCTTCGCACTCAACAAGCCCATGCTGGCATTGTCGTCTTCGTCTCGAACCAAAGCCCCTATCAGAGCCATGAACTCCTCCTCCGTCCGGACCTCTCTCTCCACCAACTTCGTTGCTCCTTGCGCCGGAATCAGCAGCTCCTCTAGCCTTTTCTCGGGCCACAAGCTCCGACCCTCGTCCCTCAATCCGGCGTCCTTTCGTGGTTCCAACGCCAAACGAGGCGTCGTTACTATGGTTATTCCTTTTTCAAGAGGAAGTGCATGGGAGCAACCTCCACCAGACTTAGCTTCTTACTTGTACAAAAATCGAATTGTGTATTTGGGCATGTCTCTTGTCCCATCTGTCACTGAGTTGATACTAGCTGAATTTCTTTACCTTcaatatgaagatgatgataAGCCTATTTACCTATACATAAACTCCACTGGGACAACTAAGGGAGGTGAGAAGTTGGGTTATGAGACTGAGGCCTTTGCAATTTATGATGTGATGAGGTATGTCAAGCCTCCTATCTTTACTCTTTGTGTTGGTAATGCTTGGGGAGAAGCAGCCTTGCTTTTGGCTGCTGGTGCAAAGGGAAACCGTTCTGCTTTGCCATCATCAACAATAATGATGAGACAGCCAATTGCAAGGTTTCAAGGTCAAGCAACAGATGTTAACCTTGCAAGAAGAGAAGTCAATAATGTGAAGGCAGAACTGGTTAAACTGTATGCAAAGCATATTGAAAAATCACCTGAGCAGATTGAAGCTGATATTCAGCGTCCAAAGTATTTTAGCCCTAGTGAAGCTGTTGAGTATGGAATCATAGATAAGGTATTATACAATGATAGGGGCACAGAAGATCGAGGAGTTGTTTCTAACCTTAAAAAGGCACAGCTTATTTGA 909 0.4455 MEVATTASSFALNKPMLALSSSSRTKAPIRAMNSSSVRTSLSTNFVAPCAGISSSSSLFSGHKLRPSSLNPASFRGSNAKRGVVTMVIPFSRGSAWEQPPPDLASYLYKNRIVYLGMSLVPSVTELILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYVKPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMMRQPIARFQGQATDVNLARREVNNVKAELVKLYAKHIEKSPEQIEADIQRPKYFSPSEAVEYGIIDKVLYNDRGTEDRGVVSNLKKAQLI 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1677 302 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 17 301 IPR023562 -
Ssu6g1677 302 CDD S14_ClpP_2 102 280 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu6g1677 302 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 17 301 - -
Ssu6g1677 302 Gene3D - 74 287 - -
Ssu6g1677 302 Pfam Clp protease 102 282 IPR023562 -
Ssu6g1677 302 PRINTS Clp protease catalytic subunit P signature 142 162 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu6g1677 302 PRINTS Clp protease catalytic subunit P signature 202 221 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu6g1677 302 PRINTS Clp protease catalytic subunit P signature 259 278 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu6g1677 302 PRINTS Clp protease catalytic subunit P signature 102 117 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu6g1677 302 PRINTS Clp protease catalytic subunit P signature 181 198 IPR001907 GO:0004176|GO:0004252|GO:0006508
Ssu6g1677 302 Coils Coil 227 247 - -
Ssu6g1677 302 SUPERFAMILY ClpP/crotonase 97 283 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1677 Ssu-Chr6 28076188 28084985 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1677 K01358 - gmx:100780029 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1677 6 28076188 28084985 Ssu6g1677 6 28076188 28084985 ECH