Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1603 ATGTCTTCAAAATCAAAAGCTACAGCTATGTTCttcatcttaaaaatattagtgtTAAATGCTTTGCCACCAATATATGCATGTGATCCGTGCACTCCGCCACGTCACCCCAAACGGCCGCCGCATCACGGAGGAGGCCGGCCAAAAGGGTCCCCTCCTCTGCCGCCGATCATAATCAACCCTCCTTTGGTACCCCCGCCGGTGGTGATATACCCTCCGCCAACCTTGCCGTACCCGCCGCCGCACGGCGGTGTTCCTCCTCCTCAACGGACTTGCCCAATTGATGCCCTAAAATTGGGACTTTGCTTGGATGTGCTTGGAGGATTGGTGCATGTGGGAATAGGGAACCCAATCGAGAACGTGTGTTGTCCCGTTATACAAGGGTTGCTTGATCTTGAAGCTGCAATTTGTCTTTGCACCGTTATTAGGGCTAAGCTTCTTAACCTCAATATCTTCATTCCTATTGCACTTCAAGTCTTGATCACTTGCGGGAAGACTCCTCCTCCTGGTTTTGTTTGTCCACCTCTCTGA 531 0.4953 MSSKSKATAMFFILKILVLNALPPIYACDPCTPPRHPKRPPHHGGGRPKGSPPLPPIIINPPLVPPPVVIYPPPTLPYPPPHGGVPPPQRTCPIDALKLGLCLDVLGGLVHVGIGNPIENVCCPVIQGLLDLEAAICLCTVIRAKLLNLNIFIPIALQVLITCGKTPPPGFVCPPL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1603 176 CDD HPS_like 91 173 IPR027923 -
Ssu6g1603 176 Pfam Hydrophobic seed protein 91 174 IPR027923 -
Ssu6g1603 176 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 5 175 - -
Ssu6g1603 176 SMART aai_6 92 173 IPR016140 -
Ssu6g1603 176 Gene3D - 89 175 IPR036312 -
Ssu6g1603 176 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 94 175 IPR036312 -
Ssu6g1603 176 PANTHER - 5 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1603 Ssu-Chr6 26686607 26687137 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1603 91 175 Acyl Lipid Metabolism Gene Families AT4G22490 35.294 1.78e-10 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1603 - - gmx:100802510 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1603 6 26686607 26687137 Ssu6g1603 6 26686607 26687137 ECH