Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1589 ATGGCTTCTTCTAGAGCTCTCTTCTTCTGTGTCATCAACGTCTCCTTGCTTCTCACCCTCTCTTCCGCAGCGGATCCATTCGTTTCCTACGACTTTGAGGTCACTTACATCACTGCCTCCCCTCTTGGAGTTCCTCAGCAGGTCATTGCTATCAACGACAAGTTTCCAGGTCCTACTATCAATGTAACCACAAACAACAACGTTGTTGTCAATGTCTGGGATTCAACAAAGGAGGAGTTCGTGGCAGGATGGTGTTCTTGGCACAAATTGTCCATTCCTCCTAAGTGGAACTGGACTTACCAGTTTCAGGTCAAGGATCAGATTGGAAGCTTTTTCTACTTCCCTTCCCTTCATCTTCAGAGAGCTGCTGGTGGATTTGGGGGTTTCATCGTAAACAACCGACCCATCATTCCTATTCCTTTTGATACCCCCCATGGGGACATTGTTGTTTTTATTGGAGATTGGTACACCCGCAATCATACGGATTTGAGGAAGGACCTTGATGACGGAAAAGATCTTGGCATGCCTGATGGTGTTCTCATCAACGGGAAGGGCCCTTACCGATATAACGATACACTTGTTCCTGATGGCATTGATTATGAAACAATTGATGTTCATCCTGGAAAAACTTACCGACTTCGTGTACATAATGTTGGAGTATCAACAAGTCTGAATTTCAGGATCCAGAGTCATAACTTACTTCTAGCAGAGACAGAGGGGTCTTACACAGTGCAACAGAACTACACTAGCTTAGATATTCATGTTGGACAATCTTATTCTTTTCTGGTAACCATGGATCAGAATGCAAGTACAGATTACTATATTGTAGCAAGTGCCAGGTTTGTGAATGAATCACGTTGGCAAAGAGTTACTGGGGTTGCCATCTTGCGCTATTCAAATTCCAAAGGGAAGGCTCATGGTCCTCTCCCACCGGCACCTGATGATCAATATGACAAAACTTACTCAATGAACCAAGCAAGATCCATCAGATGGAATGTATCAGCTAGTGGTGCTCGTCCTAACCCACAAGGGTCTTTCAGATATGGTTCCATCAATGTGACTGAGATTtatgtattgaaaaataagcCACCGGAGAAAATCGATGGGAAGCGGCGAGCAACACTCAGTGGGATCTCTTTTGTCAATCCTTCCACTCCAATCAGGCTTGCTGACCAGTACAAATTAAAGGGAGTATACAAGCTTGATTTCCCCTCCAAGCCTCTTACCGGATCACCTCGCACAGAAACATCAGTCATTAATGGAACTTATAGGGGATTTATGGAAGTTATACTGCAGAACAATGATACTAAGATGCATACCTATCACATGAGTGGATATGCATTTTTTGTAGTCGGGATGGATTATGGTGATTGGTCTGAGAATAGCAGGGGCACATATAATAAGTGGGATGGAATAGCTCGCGCTACTACACAGGTTTATCCTGGAGCATGGACAGCAATTTTGGTTTCCCTCGACAACGTTGGAGTTTGGAATCTCAGAACAGAAAACCTTGATTCATGGTATCTTGGTCAAGAAACATATGTCAGGGTTGTCAACCCAGAGGCTACTAACAAGACTGAGCTGCCCATTCCAGACAATGCCCTTTTCTGTGGTGCCCTTAGTAAATTGCAGAAGCCTCAAGTTATTTCTTCAGATGCAACATCAATCAGTGGGAATAGACTGAAGCTGTTCTTCAACTGGTTAATTGTATGCGCCTGGATCCACATTTTCCAGTAA 1737 0.4358 MASSRALFFCVINVSLLLTLSSAADPFVSYDFEVTYITASPLGVPQQVIAINDKFPGPTINVTTNNNVVVNVWDSTKEEFVAGWCSWHKLSIPPKWNWTYQFQVKDQIGSFFYFPSLHLQRAAGGFGGFIVNNRPIIPIPFDTPHGDIVVFIGDWYTRNHTDLRKDLDDGKDLGMPDGVLINGKGPYRYNDTLVPDGIDYETIDVHPGKTYRLRVHNVGVSTSLNFRIQSHNLLLAETEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESRWQRVTGVAILRYSNSKGKAHGPLPPAPDDQYDKTYSMNQARSIRWNVSASGARPNPQGSFRYGSINVTEIYVLKNKPPEKIDGKRRATLSGISFVNPSTPIRLADQYKLKGVYKLDFPSKPLTGSPRTETSVINGTYRGFMEVILQNNDTKMHTYHMSGYAFFVVGMDYGDWSENSRGTYNKWDGIARATTQVYPGAWTAILVSLDNVGVWNLRTENLDSWYLGQETYVRVVNPEATNKTELPIPDNALFCGALSKLQKPQVISSDATSISGNRLKLFFNWLIVCAWIHIFQ 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1589 578 PANTHER MONOCOPPER OXIDASE-LIKE PROTEIN SKS1 12 549 - -
Ssu6g1589 578 SUPERFAMILY Cupredoxins 365 538 IPR008972 -
Ssu6g1589 578 SUPERFAMILY Cupredoxins 22 161 IPR008972 -
Ssu6g1589 578 Pfam Multicopper oxidase 148 300 IPR001117 -
Ssu6g1589 578 Gene3D - 350 548 IPR008972 -
Ssu6g1589 578 PANTHER MULTI-COPPER OXIDASE 12 549 IPR045087 -
Ssu6g1589 578 Pfam Multicopper oxidase 393 520 IPR011706 GO:0005507|GO:0016491
Ssu6g1589 578 Pfam Multicopper oxidase 34 134 IPR011707 GO:0005507
Ssu6g1589 578 SUPERFAMILY Cupredoxins 143 340 IPR008972 -
Ssu6g1589 578 Gene3D - 145 338 IPR008972 -
Ssu6g1589 578 Gene3D - 19 133 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1589 Ssu-Chr6 26242688 26246619 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1589 - - gmx:100798971 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1589 6 26242688 26246619 Ssu6g1589 6 26242688 26246619 ECH