Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1571 ATGAAGGTGGAAAACATGGTAAAATTAAAGGAGGAAATTGATTACAAAAGCTTATGTAGAAGGCTAGACATAGAATTAGACGAACTCACTATGGAATATAAAAGGCAGCAGAAGGTATTTGAGGATGATATTGAACGATTAACCACAGAAGCACAACATCGGATATCAGAGGCCCAAAAGAACTATTCGAATTCACTGGAGAAGGAAAGATTGAAATATCAGAAAGACTACAAGGAATCAATTAAGAGGCTTGAAGAGAAGGTGatggagaataaaaaaaagtatgaggATTTTTGTATGACATCTACTAGAGAGATTGCCATGGTGCCTGCTGAGGAAGTagacattttgaaaaaaatacttcagCAAGAGACTCTTTTAAGAAATGCTGCCCAAGGGGAGATAAATCATCTGAAAAATCAAATGGCAGAACTGAAACTGTCCGAGGCAACAAGAGAGTCAGATATATTAAAACTTCGCAAGATGTTGGAAGATGAGGCACATCAGAAAGAGAAACTCAAAGGAGAAATAGCAAGATTGCAAAGTCAGTTGTTGCAATTAGGTTTTGAAGTTGGCAAAACAGGACAACAACAAATTGACGGAGGTGGATTTGAAAAAGATGCTAGTGGTCTAGATTCTCCCACTTCCCTAGTTAAGCATCAACAGCAAGCTTCAGGGAGATTGCAGAAGACTCTGTCATTGTTTGAAGTAGAAGATGCTGATGTGCGAATCCATGCCGTGAAAATAGTAGCAAATTTAGCTGCTGAAGAAACAAATCACAAGAAGATTGTAGAAGCAGGTGGTCTTACGTCCTTGCTTACACTGCTTAAGAACTCACAAGATGAAACCACACTTAGAATTGCAGCAAGCGCCATAGCAAATTTGGCAATGAATGAAACTAATCAAGATCTCATTGTGGCTCAAGGAGGCATTAATTTACTGTCAATGACAGCAGCCAATGCTGAAGATCCTCAGACCCTTCGAATGGTTGCTGGAGCAATTGCTAATCTTTGTGGCAATGataaacaacaaataaagcTTAAGGAAGAAGGTGGTATCAAGGCACTGTTGGGAATGGTCAGATGCAGACATCCTGAAGTACATACACAGATTGCCCGCGGAATAGCCAACTTTGCGAAGTGCGAGTCAAAAGCATTTACTCAAGGGACAAAGGTTGGAAGGTCTTTACTTATTGAGGACGGTGTGCTTCCATGGATAGTGCAAAACGCAAATAATGGAGTGTCGTTAGTTAGGCGTCATATTGAGCTTGCACTTTGTCATTTAGCACAACATGAAGCAAATGCTAGAGACATGATTAGTGGAGGTGCAATACTAGAGCTAGTTCGTATCTCGAGAGATAGTTTAAGAGAAGACATAAGGATTCTTGCACGTCGAACACTAGTCTCCAGCCCCGCTTTCCAAGCTGAAATTAGGCGTTCGGGGATAGATTATTGA 1455 0.3911 MKVENMVKLKEEIDYKSLCRRLDIELDELTMEYKRQQKVFEDDIERLTTEAQHRISEAQKNYSNSLEKERLKYQKDYKESIKRLEEKVMENKKKYEDFCMTSTREIAMVPAEEVDILKKILQQETLLRNAAQGEINHLKNQMAELKLSEATRESDILKLRKMLEDEAHQKEKLKGEIARLQSQLLQLGFEVGKTGQQQIDGGGFEKDASGLDSPTSLVKHQQQASGRLQKTLSLFEVEDADVRIHAVKIVANLAAEETNHKKIVEAGGLTSLLTLLKNSQDETTLRIAASAIANLAMNETNQDLIVAQGGINLLSMTAANAEDPQTLRMVAGAIANLCGNDKQQIKLKEEGGIKALLGMVRCRHPEVHTQIARGIANFAKCESKAFTQGTKVGRSLLIEDGVLPWIVQNANNGVSLVRRHIELALCHLAQHEANARDMISGGAILELVRISRDSLREDIRILARRTLVSSPAFQAEIRRSGIDY 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1571 484 Pfam Armadillo/beta-catenin-like repeat 263 296 IPR000225 GO:0005515
Ssu6g1571 484 Coils Coil 121 148 - -
Ssu6g1571 484 Coils Coil 156 190 - -
Ssu6g1571 484 PANTHER KINESIN-RELATED 1 476 IPR027640 GO:0003777|GO:0007018
Ssu6g1571 484 SMART arm_5 255 297 IPR000225 GO:0005515
Ssu6g1571 484 SMART arm_5 340 380 IPR000225 GO:0005515
Ssu6g1571 484 SMART arm_5 298 339 IPR000225 GO:0005515
Ssu6g1571 484 SUPERFAMILY ARM repeat 228 461 IPR016024 -
Ssu6g1571 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 267 310 IPR000225 GO:0005515
Ssu6g1571 484 Gene3D - 220 388 IPR011989 -
Ssu6g1571 484 Gene3D - 389 482 IPR011989 -
Ssu6g1571 484 Coils Coil 19 39 - -
Ssu6g1571 484 Coils Coil 74 94 - -
Ssu6g1571 484 PANTHER KINESIN-LIKE PROTEIN KIN-UA 1 476 IPR033291 GO:0008017|GO:0032886|GO:0048364
Ssu6g1571 484 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 226 268 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1571 Ssu-Chr6 25871808 25876207 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1571 - - ccaj:109807166 793.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1571 6 25871808 25876207 Ssu6g1571 6 25871808 25876207 ECH