Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1531 ATGGCAAAGAATGTGGGGATTCTCGCTATCGACATCTACTTCCCTTCCACCTGTATTCAGCAGGAAGTACTGGAGGCTCATGATGGTGCTAGTAAAGGGAAATATACTATTGGACTTGGTCAAGAATGCATGGCTTTTTGTACAGAATTAGAAGATGTCATCTCGATGAGTTTGACAGTAGTTTTTTCCCTTCTTGAGAAGTATGGGATTGATCCTAAACAAATTGGTCGTCTGGAAGTAGGCAGTGAGACTGTGATTGACAAAAGCAAGTCCATCAAGACTTTCCTGATGCAGATCTTTGAGAAATATGGAAATACTGATATCGAGGGTGTGGATTCAACTAATGCATGCTATGGAGGAACTGCTGCTTTGTTCAATTGTGTCAATTGGGTGGAGAGCAGCTCATGGGATGGACGCTTTGGACTTGTTGTCTGCACTGACAGTGCTGTCTATGCTGAAGGACCTGCTCGGCCTACTGGTGGAGCTGCTGCTGTTGCCATGCTAATTGGTCCCGATGCTCCCATTGCTTTTGAAAGCAAATTGAGGGGAAGTCATATGGCTCATGCCTATGATTTTTACAAGCCTAATCTTGCCAGTGAATATCCAgTTGTTGATGGGAAGCTTTCTCAAACTTGTTACCTTATGGCCCTTGATTCTTGCTATAATCACTTAAGTCACAAATACGAGAAACTAGagggaaattttttttctatttctgaTGCTGAATACTTTGTATTTCACTCTCCATATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTGTTCAATGACTTCTTGAAAAATCCcagTTTTGTGGATGAGGTTGCCAAAGAAAAGCTGGAACCTTTTGCAACATTATCTGCTGATGAGAGCTATCAAAGCCGGGATCTAGAAAAGGCATGCCAGCAAGTTGCAAAGCCTCAATACGATGCAAAGGTGCAACCAACCACTTTGATACCAAAACAAGTTGGCAACATGTACACTGCATCTCTTTATGCAGCCTTTATTTCACTTATTCATAACAAACATAGCACATTGgATGGTAAGAGGGTAATATTGTTCTCATATGGAAGTGGCTTAACTTCTACAATGTTCTCTTTGCAATTACGTGATGGTCAACATCCATTTAGCTTGTCAAACATTGCTAAAGTGATGGATGTTGATGGAAAATTGAAGTCAAGGCATGAGGTATTTATCTTTTAA 1206 0.3997 MAKNVGILAIDIYFPSTCIQQEVLEAHDGASKGKYTIGLGQECMAFCTELEDVISMSLTVVFSLLEKYGIDPKQIGRLEVGSETVIDKSKSIKTFLMQIFEKYGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRFGLVVCTDSAVYAEGPARPTGGAAAVAMLIGPDAPIAFESKLRGSHMAHAYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYNHLSHKYEKLEGNFFSISDAEYFVFHSPYNKLVQKSFARLVFNDFLKNPSFVDEVAKEKLEPFATLSADESYQSRDLEKACQQVAKPQYDAKVQPTTLIPKQVGNMYTASLYAAFISLIHNKHSTLDGKRVILFSYGSGLTSTMFSLQLRDGQHPFSLSNIAKVMDVDGKLKSRHEVFIF 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1531 401 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 105 120 IPR000590 GO:0004421|GO:0008299
Ssu6g1531 401 SUPERFAMILY Thiolase-like 175 398 IPR016039 GO:0016746
Ssu6g1531 401 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 2 398 IPR010122 GO:0004421|GO:0008299
Ssu6g1531 401 SUPERFAMILY Thiolase-like 4 172 IPR016039 GO:0016746
Ssu6g1531 401 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 398 - -
Ssu6g1531 401 CDD init_cond_enzymes 4 368 - -
Ssu6g1531 401 Gene3D - 1 400 IPR016039 GO:0016746
Ssu6g1531 401 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 175 398 IPR013746 GO:0004421|GO:0006084|GO:0010142
Ssu6g1531 401 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 2 174 IPR013528 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1531 Ssu-Chr6 25120761 25124937 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1531 K01641 - gmx:100780554 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1531 6 25120761 25124937 Ssu6g1531 6 25120761 25124937 ECH
Ssu6g1531 6 25120761 25124937 Ssu2g2814 2 89085172 89091691 PCT