Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1519 ATGAGCCAGTTATCACCCACCTCTTCTTTCTGTGAAAGGAAAGAGGGCCACCCAAATGTATCAAATCCCCAAGTACAGGATGAGCCCAACATGTCCACCACTCTGATCCCCAAATCCCCAACATGTCACGACCAAACCCAAAATCCCCACGACACCCATTTGTCCCTGGCCATCAACGAAGCCAAGTGCATAGCCAACATCTCATTCTCCATGGTCCTAACTGGTCTATTACTCTATTCCCGCTCCATGATCTCCATGCTCTTCCTCGGCCACCTCGGCGAGCTCGCTCTCGCAGGTGGCTCCTTAGCCATCGGATTCGCCAACATCACAGGCTACTCTGTTCTCTCTGGCCTCGCCATGGGGATGGAACCCATCTGCGGCCAGGCCTTCGGGGCAAAACGCTTCAAACTCCTCGGCCTCACGATGCAGAGGACCGTGCTTCTTCTCCTCCTAACTTCATGCCTCATCTCATTCTTTTGGCTAAACATGAAGAAAATATTGCTCATTTGTGGCCAAGAAGAGGACATAGCCAACGAGGCACAATTCTACATATTTTATTGTCTCCCTGATCTTGTATTGCAATCGCTCCTACACCCTCTTCGAATCTACCTTCGAAGCCAATCAATAACGCTTCCTCTCACGTGCTGCGCCGCTCTCTCGATTCTCCTCCACGTGCCCGTCAATTACCTCCTGGTCTCCGTGCTTAGCCTCGGAATCAAAGGCATCGCGTTAAGCGCCGTCGTGACAAACTTCAGCCTCGTGGCGTCGTTGGTTATTTATGTCGTGGTCTCGGGCACGCACCAGAAGACGTGGCCGGGTATTTCCTGGAGCTGTTTCAAGGGGTGGAAGACGCTCTTGAATCTCGCGATTCCGAGCTGCGTTTCGGTTTGTCTCGAATGGTGGTGGTATGAAATAATGATATTACTTTGCGGGTTATTGGTTAATCCCCATGCAAGCGTCGCGTCTATGGGGGTTTTGATTCAAACCACGGCTTTGATATACATTTTCCCGTCCTCCCTGAGTTTCGGAGTGTCCACGAGGGTTGGAAACGAGTTGGGCGCGGGGAATCCCCGGAGGGCGAAGCTGGCGGCGATTGTGGGCCTCTGCTTCAGTTTCGTTCTGGGCTTCTCTGCTTGGGTGTTCGCGGTTTCGGTGAGGAAGGTTTGGGCCTCGATGTTCACGCTGGACGCGGAGATCATTGGTTTGACGTGTACGGTGTTGCCTATCATTGGGCTCTGTGAGCTCGGGAACTGTCCCCAAACGACGGTTTGCGGCGTTCTGAGGGGAACCGCGAGGCCGAAACTAGGGGCCAACATAAACTTGGGCTGCTTCTACCTCGTGGGCATGCCCGTTGCGGTGTGGTTGGGGTTCTTTGCGGGGTTTGACTTCAAAGGGTTGTGGCTCGGGATGTTGGCGGCGCAAGGGTCGTGTATGATGACAATGATGTTCGTGTTGGCACGGACGAATTGGGACGGTCAAGCGCTAAGAGCGAAGGAGCTCATGTCTTCTGATCCTAGTGAGGAGAAAAAACTAGTGGAAGAGGAGGGGGAAGATGAACTAGTTGAGAAATGCTTTTTGGGATCGTGTGCCACTAAAGTAGGCTCTGATTTAGTTGTTTGA 1620 0.5272 MSQLSPTSSFCERKEGHPNVSNPQVQDEPNMSTTLIPKSPTCHDQTQNPHDTHLSLAINEAKCIANISFSMVLTGLLLYSRSMISMLFLGHLGELALAGGSLAIGFANITGYSVLSGLAMGMEPICGQAFGAKRFKLLGLTMQRTVLLLLLTSCLISFFWLNMKKILLICGQEEDIANEAQFYIFYCLPDLVLQSLLHPLRIYLRSQSITLPLTCCAALSILLHVPVNYLLVSVLSLGIKGIALSAVVTNFSLVASLVIYVVVSGTHQKTWPGISWSCFKGWKTLLNLAIPSCVSVCLEWWWYEIMILLCGLLVNPHASVASMGVLIQTTALIYIFPSSLSFGVSTRVGNELGAGNPRRAKLAAIVGLCFSFVLGFSAWVFAVSVRKVWASMFTLDAEIIGLTCTVLPIIGLCELGNCPQTTVCGVLRGTARPKLGANINLGCFYLVGMPVAVWLGFFAGFDFKGLWLGMLAAQGSCMMTMMFVLARTNWDGQALRAKELMSSDPSEEKKLVEEEGEDELVEKCFLGSCATKVGSDLVV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1519 539 Pfam MatE 72 230 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu6g1519 539 Pfam MatE 291 454 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu6g1519 539 PANTHER MULTIDRUG RESISTANCE PROTEIN 40 513 - -
Ssu6g1519 539 MobiDBLite consensus disorder prediction 1 49 - -
Ssu6g1519 539 CDD MATE_eukaryotic 60 494 IPR045069 GO:0042910|GO:1990961
Ssu6g1519 539 PANTHER PROTEIN DETOXIFICATION 40 513 - -
Ssu6g1519 539 TIGRFAM matE: MATE efflux family protein 80 467 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1519 Ssu-Chr6 24905029 24906648 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1519 K03327 - gmx:100778250 879.782
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1519 6 24905029 24906648 Ssu6g1519 6 24905029 24906648 ECH