Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1504 ATGAACTCTCGCGAGGCTACTTTAGTGGCCACGGCAACTGTGATCGGCGCCTTGGCCTCCGCAATTGGTTTCCGCTTCTTTTGCCGCTCCCAAGAGCACGCTAGATCCTCGCAAAACGGCACCGTTTCTTCTCCTCGGGACCCTTTCGACCCCTCCAAGCGCAAAGGaTATTTGTCGTGGGATGACTATTTTATGGCAATTGCATTTTTGTCAGCTGAGAGGTCCAAAGACCCTAACAGGCAgGTGGGGGCTTGTTTGGTGAGTCAAGATGGGATAATTCTTGGAATTGGTTATAACGGGTTTCCAAGAGGTTGTTCTGATGACAAGCTACCCTGGGCAAAGAAATCCAGGACTGGGAATCCTTTGGAGACAAAGTACCCTTATGTTTGTCATGCAGAAGTAAATGCTATTCTTAACACTAATCATGCCTCTGCTGCTGGACAACGGCTATATGTGACCATGTTTCCGTGCAATGAATGTGCTAAGATCATAATCCAGTCAGGAGTTTCtgaagtaatttattttgtggAGAAGAGATTAGAAAATTCAGATATTGTATATATTGCCTCTCACAATCTACTTTCATTGGCTGGTGTAAagGTCAGGAAACATCAACCACTGATGAATGAAATTCATCTGAAGTTTGAGGAGTGTTAG 657 0.4384 MNSREATLVATATVIGALASAIGFRFFCRSQEHARSSQNGTVSSPRDPFDPSKRKGYLSWDDYFMAIAFLSAERSKDPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSRTGNPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFPCNECAKIIIQSGVSEVIYFVEKRLENSDIVYIASHNLLSLAGVKVRKHQPLMNEIHLKFEEC 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1504 218 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 59 175 IPR002125 -
Ssu6g1504 218 CDD deoxycytidylate_deaminase 61 174 IPR035105 -
Ssu6g1504 218 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 131 164 IPR016192 GO:0008270|GO:0016787
Ssu6g1504 218 Gene3D Cytidine Deaminase, domain 2 51 218 - -
Ssu6g1504 218 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 59 187 IPR002125 -
Ssu6g1504 218 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 1 217 - -
Ssu6g1504 218 PANTHER DEOXYCYTIDYLATE DEAMINASE-RELATED 1 217 IPR015517 -
Ssu6g1504 218 SUPERFAMILY Cytidine deaminase-like 61 207 IPR016193 GO:0003824
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1504 K01493 - gmx:100792003 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1504 6 24678554 24681479 Ssu6g1504 6 24678554 24681479 ECH