Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1503 ATGGAGGTCGAACTCAAACAGTTGCAGGCCGATCTTCAGTCTCTGAGCCAATCGCTTCCGGATCCATCTCACCATGCTTTGCTCCGCAAGATTCAATTGCGTGTTGAGGACCTTGCGAATCTTGCAACGGCTGCACCTGTTCGGCGCTCTAAAGTTCAGGATCTGAGTGCTGAGGTTGTAGATAGCAATCCTTATAGTCGGCTTATGGCACTTCAGAGAATGGGTATTGTGGAGAACTATGAAAGAATACGCGATTTCTCCGTTGCCATAGTTGGAATAGGTGGTGTAGGAAGTGTTGCAGCTGAGATGCTAACTAGATGTGGTATAGGTCGACTTTTGTTGTATGATTATGACAAAGTGGAGCTTGCAAACATGAATAGGTTGTTCTTTCGTCCAGATCAGGTTGGTATGACAAAGACTGATGCAGCTGTACAGACTCTTTCAGACATAAACCCTGATGTTGTACTTGAGagctatACACTGAATATCACCACCGTCACAGGTTTTGAAACCTTTGTGTCAAGTTTGAAAAATAAGTCATTTTGCCCAAATAAACAAGGGAGTGGTGTGGATCTGGTTTTAAGTTGTGTGGATAATTATGAAGCAAGAATGGCTGTTAACcagGCTTGTAATGAATTGAGCCAAACATGGATGGAGTCAGGTGTTTCTGAGGATGCTGTTTCTGGCCATATTCAACTACTTATTCCTGGTGAAACTGCCTGTTTTGCATGTGCACCTCCTCTGGTTGTTGCATCTGGGGTAGATGAACGCACGCTCAAGCGTGAAGGGGTTTGTGCTGCGTCTTTACCCACCACTATGGGGGTCGTTGCTGGCCTTCTAGTCCAAAATAcactaaaattattgttaggCTTTGGACAAGTCTCTCCATATTTGGGATATAATTCTCTTAAGGATTTTTTCCCAACTATGCAAATGAAGCCGAACCCTCAATGTTCAAATGTAGCCTGCTTGAAAAGACAGGAAGGGTACATGCTTGCAAAACCAGCAAGAGATGCTGCAGCCAAAGCAAAAATGGAAGCTGAAGCACTATCAACTGAGGAAGGGCCACTTCACCAAGATAATGAATGGAATATAAGTGTTGTTGATGATTTTGAACTGGACGGTCCGGATACCAGAGGTTCAGATGTTCTGCCGGAAGGTCTCACACATGAACTTCCTAGTGCAGACGAGTTTCATAAGGCAACTCTCGACGCTCCAGTAGTTGACAATGACGACCTTGAAGATCTTCGTAGGCAACTTGAAGCCATTAATTCTGCATAG 1281 0.4356 MEVELKQLQADLQSLSQSLPDPSHHALLRKIQLRVEDLANLATAAPVRRSKVQDLSAEVVDSNPYSRLMALQRMGIVENYERIRDFSVAIVGIGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPDQVGMTKTDAAVQTLSDINPDVVLESYTLNITTVTGFETFVSSLKNKSFCPNKQGSGVDLVLSCVDNYEARMAVNQACNELSQTWMESGVSEDAVSGHIQLLIPGETACFACAPPLVVASGVDERTLKREGVCAASLPTTMGVVAGLLVQNTLKLLLGFGQVSPYLGYNSLKDFFPTMQMKPNPQCSNVACLKRQEGYMLAKPARDAAAKAKMEAEALSTEEGPLHQDNEWNISVVDDFELDGPDTRGSDVLPEGLTHELPSADEFHKATLDAPVVDNDDLEDLRRQLEAINSA 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1503 426 PANTHER BNAANNG16230D PROTEIN 1 426 - -
Ssu6g1503 426 Pfam ThiF family 65 319 IPR000594 -
Ssu6g1503 426 Gene3D - 82 343 - -
Ssu6g1503 426 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 88 116 IPR029752 -
Ssu6g1503 426 CDD ThiF_MoeB_HesA_family 64 312 - -
Ssu6g1503 426 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 61 323 IPR035985 GO:0008641
Ssu6g1503 426 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 1 426 IPR045886 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1503 Ssu-Chr6 24671156 24676375 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1503 52 247 EF-hand Containing Proteins AT2G30110 26.442 6.74e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1503 K12164 - gmx:100819760 753.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1503 6 24671156 24676375 Ssu6g1503 6 24671156 24676375 ECH