Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1496 ATGCTCTTGCTGCTTTCTAAGTACAAGATGAAGAGTGTTCCTGTGTTGGATTTAGGCTCTGGTAGAATTGATAACATTATTACACAATCTGCTGTGATTCATATGCTGGCAGAATGTGCTGGACTTCAGTGGTTCGAAAGTTGGGGGACCAAGAAACTATCTGAAGTTGGTCTTCCCCTGGTGACACGAAATCATATCAtcaagGTTTATGAGGATGAGCCAGTCCTTCAAGCATTTAAACTAATGAGGAAAAAGAGGGTTGGTGGGGTGCCTGTAATTGAAAGAGATAGCAAAAGGGCAGTTGGTAATATAAGCTTGCGAGATGTTCAATTCTTGCTAACCGCACCAGAAATCTATCATGATTATAGAGCTATTACAGTAAAGGACTTCCTGACTGCCGTTAGAAGCTACTTGGAGAAGAATAAAAATGCACTCCCAATGTTAAGTGAATTTATTACGTGCAAAGAGGACTGTACAATCAAAGAATTGATTCAACTGCTTGATCAAGAGAAGATTCATAGGGTCTATGTGGTGGACGAGGATGGGGATCTGCAAGGACTAATCACACTAAGAGATATCATCTCAAGGCTAGTACATGAGCCCCGTGGCTATTTTGGTGATTTCTTTGATGGTGTTCTCCCGCTGCCTGCAAACACCAGAGTTTAA 666 0.4129 MLLLLSKYKMKSVPVLDLGSGRIDNIITQSAVIHMLAECAGLQWFESWGTKKLSEVGLPLVTRNHIIKVYEDEPVLQAFKLMRKKRVGGVPVIERDSKRAVGNISLRDVQFLLTAPEIYHDYRAITVKDFLTAVRSYLEKNKNALPMLSEFITCKEDCTIKELIQLLDQEKIHRVYVVDEDGDLQGLITLRDIISRLVHEPRGYFGDFFDGVLPLPANTRV 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1496 221 CDD CBS_pair_SF 2 109 - -
Ssu6g1496 221 Pfam CBS domain 65 109 IPR000644 -
Ssu6g1496 221 Pfam CBS domain 147 198 IPR000644 -
Ssu6g1496 221 SUPERFAMILY CBS-domain pair 56 207 IPR046342 -
Ssu6g1496 221 CDD CBS_pair_SF 65 194 - -
Ssu6g1496 221 ProSiteProfiles CBS domain profile. 61 122 IPR000644 -
Ssu6g1496 221 ProSiteProfiles CBS domain profile. 147 205 IPR000644 -
Ssu6g1496 221 SMART cbs_1 65 114 IPR000644 -
Ssu6g1496 221 SMART cbs_1 150 198 IPR000644 -
Ssu6g1496 221 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 1 221 - -
Ssu6g1496 221 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA-1 1 221 - -
Ssu6g1496 221 Gene3D - 49 200 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1496 Ssu-Chr6 24583766 24585091 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1496 - - gmx:100818156 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1496 6 24583766 24585091 Ssu6g1496 6 24583766 24585091 ECH
Ssu6g1496 6 24583766 24585091 Ssu1g2364 1 66091157 66092447 PCT