Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu6g1492 | atGGTTTCGACGAGACGCAGTGGATCTCTCTCTGCCAGCAATACCAAAAGATCTTCCTCCTCGGAAGATAAACCTCCTTCGCCGAAGCGTCAAAAGGTCGATAATGGCGGTTCGTCGGAGAAACCGGTGCCGCCGGCGGAGAATTCCAAGGATTTATGTACTCCGGAGCCCGTGCCTGATCCCGGAGAATGTGGCTCCGGCGATGCTCAGATCGCCGGAGCGGGTGCCGCCGATGGAGTGAGCTCCGGCAAGGGTGACGCTATGCCGGCTGTGCCTGTGACGGCACCGATTGCTGATGCCTCATGTCCGTCGTTGTCGTGGAGTATACATCAGAAACAGAATCCGAATATCGAGGGAGGGCTGTGGTGCAGGTTCTTGTCACAGTCTGCACAGAATCCTAATGTTGCTGTTTGCACACCCAATTTCACGATTGGTTCTAGTAGAAGTTGCAACTTTCCACTGAAGGATCAAACTATAAGTGGAAATTTATGCAAGATCAAACATACGCAGCGCGAGGGAAGTGCTGTAGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGGACGCATGTCAAGAAGAATACCAGCTGTGTGCTTAACTCGGGTGATGAAGTGGTTTTTGGTGTGCTTGGAAATCATTCTTATATTTTCCAACAACTAAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAAAGTGGTGTTGGGAAATTTCTGCCACTTGAAAGGAGAAGTGGAGACCCTTCAGCTGTGGCTGGGGCCTCTATTTTGGCTTCTCTTTCTAACATCAGACAGGACCTTAAAAGACGGAAATCTCCATCTCAGACCTCCAGTAAACCTCACCAGGGTACCGATGTCTCTAGTCATTCTGTTCTTCATGATTGTACAGAAATTGAACCTGATGGCTCAGAATCAGTTCCAAATGTGCGGAGTGATAAAGTAGCTGATGTTCGAACAAGTGACAAAAATTCAACAATCGATTGCAATCCAGATGCTGGTGCAGAGGCAGGCCATGTAAAACTCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCAACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGTTGCTGGATATGCAGGCTGCATCGACTTTAGGTCCATCTGTGCGCTGTGCAGTGTTCAAAGAAGACGTTCATGCTGCAATACTGGATGGAAAAGAAATTGATGTTTCTTTTGACAACTTCCCCTACTATTTGAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCAGGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTTCTCTCAGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAGGATGGATTTAATGCTGAAAAATCCTTCAGCTGCACTAAACAAAGTTCTCCAGCCACAGACATGGCTAGGAGCATGGATCCATTAGCTAGTGAAACAGAGACACCTAACTCTTCAAATGCACCTACATCATATGACTTTGAGTCTCAACCTAAGTTGGAAAATGATAACATGCCATCCACCTCTGGGACAGCTAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTAGCATATATCAGACATCTTCAAGGGGACCGTCAAATGGAAGTCGGGGGAAGGTTGTCTTACTATTTGAAGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCAATACCTGATGGAGTTGATCTTGGTGGGGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGTTTGGAAAGCAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCGTTGTTTGAGGTTGTTTTTAGTGAGAGCAGAAGTGCGCCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCATATTCATTTAAAAGTAAGCTTGAAAATCTTCCGGCCAATGTGGTCGTAATAGGTTCACACACTCAAAATGACAGTCGCAAGGAGAAGTCACATCCTGGTGGTTtgctttttacaaaatttggtaGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCAGATAGTTTTGGACGATTGCATGAAAGGGGGAAGGAAGTCCAGAAACCAAATAGAACTTTGACTAAGCTTTTcccaaataaaattacaattcacATGCCACAGGATGAGGCTCTTCTAGCATCATGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTCAAAATCAAAGGAAATTTACATCACTTGCGCACAgtttTGGGACGTTGTGGAATGGAAAGTGAAGGACTTGAGACCTTATGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAAATAATTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTTGGATGCTAAGCCTGATTTGAAACTTATACTGTCGTGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCTATCCAGAACGAGTCTAAGAGCCTGAAGAAATCACTTAAGGATGTTGTAACagaaaatgaatttgaaaagaGGCTTTTGGCTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTGTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTCGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATACGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGAAGGGAAAACCCAGGGGAGCATGAGGCCATGCgaaagatgaaaaatgaattcatGGTGAATTGGGATGGCTTACGTACGAAGGATACTGAGCGAGTTCTTGTGCTGGCAGCCACTAACAGACCTTTTGACCTAGACGAGGCTGTCATAAGGCGGATGCCAAGAAGGTTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAGATATTGAAAGTTCTACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTGGATGCAGTCGCAAGTATAACCGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCAGCACACCGGCCTATTAAAGAGATCTTAGACAAGGAAAAAAAGGAACGTGCTGCTGCTCTAGCAGAAGGTCAACCAGCTCCAGCATTATGCAGCAGTGGGGACATCAGATCTTTAAACATGCAAGACTTTAAATATGCCCATCAACAGGTATGTGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAATAAAGAAAGCACTCAGCTATTTCATGTGA | 3684 | 0.4264 | MVSTRRSGSLSASNTKRSSSSEDKPPSPKRQKVDNGGSSEKPVPPAENSKDLCTPEPVPDPGECGSGDAQIAGAGAADGVSSGKGDAMPAVPVTAPIADASCPSLSWSIHQKQNPNIEGGLWCRFLSQSAQNPNVAVCTPNFTIGSSRSCNFPLKDQTISGNLCKIKHTQREGSAVAVLESTGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAVRGAEVQSGVGKFLPLERRSGDPSAVAGASILASLSNIRQDLKRRKSPSQTSSKPHQGTDVSSHSVLHDCTEIEPDGSESVPNVRSDKVADVRTSDKNSTIDCNPDAGAEAGHVKLSGVNDFLRPFFRILAQPSCKLKLSKSICKQVLEERNGLLDMQAASTLGPSVRCAVFKEDVHAAILDGKEIDVSFDNFPYYLSENTKNVLVAACFMHLRHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGFNAEKSFSCTKQSSPATDMARSMDPLASETETPNSSNAPTSYDFESQPKLENDNMPSTSGTAKSCLFKLGDRVKFSCSSSCSIYQTSSRGPSNGSRGKVVLLFEDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSYSFKSKLENLPANVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHERGKEVQKPNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMESEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNLDAKPDLKLILSCESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVLLAKEELSPDVDLDAVASITDGYSGSDLKNLCVTAAHRPIKEILDKEKKERAAALAEGQPAPALCSSGDIRSLNMQDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRIKKALSYFM | 1227 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu6g1492 | 1227 | ProSitePatterns | AAA-protein family signature. | 1066 | 1085 | IPR003960 | GO:0005524|GO:0016887 | |
Ssu6g1492 | 1227 | Gene3D | - | 921 | 1202 | IPR027417 | - | |
Ssu6g1492 | 1227 | CDD | AAA | 961 | 1094 | - | - | |
Ssu6g1492 | 1227 | CDD | FHA | 142 | 222 | IPR000253 | GO:0005515 | |
Ssu6g1492 | 1227 | MobiDBLite | consensus disorder prediction | 519 | 568 | - | - | |
Ssu6g1492 | 1227 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 375 | 1227 | - | - | |
Ssu6g1492 | 1227 | PANTHER | AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED | 81 | 352 | - | - | |
Ssu6g1492 | 1227 | SUPERFAMILY | SMAD/FHA domain | 110 | 222 | IPR008984 | GO:0005515 | |
Ssu6g1492 | 1227 | Gene3D | - | 121 | 230 | - | - | |
Ssu6g1492 | 1227 | Coils | Coil | 883 | 903 | - | - | |
Ssu6g1492 | 1227 | MobiDBLite | consensus disorder prediction | 280 | 295 | - | - | |
Ssu6g1492 | 1227 | MobiDBLite | consensus disorder prediction | 1 | 87 | - | - | |
Ssu6g1492 | 1227 | Pfam | AAA+ lid domain | 1116 | 1151 | IPR041569 | - | |
Ssu6g1492 | 1227 | Pfam | FHA domain | 143 | 212 | IPR000253 | GO:0005515 | |
Ssu6g1492 | 1227 | Gene3D | - | 1095 | 1189 | - | - | |
Ssu6g1492 | 1227 | PANTHER | ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 | 375 | 1227 | - | - | |
Ssu6g1492 | 1227 | PANTHER | ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 | 81 | 352 | - | - | |
Ssu6g1492 | 1227 | SMART | AAA_5 | 959 | 1096 | IPR003593 | - | |
Ssu6g1492 | 1227 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Ssu6g1492 | 1227 | MobiDBLite | consensus disorder prediction | 538 | 568 | - | - | |
Ssu6g1492 | 1227 | Pfam | ATPase family associated with various cellular activities (AAA) | 963 | 1092 | IPR003959 | GO:0005524|GO:0016887 | |
Ssu6g1492 | 1227 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 921 | 1201 | IPR027417 | - | |
Ssu6g1492 | 1227 | MobiDBLite | consensus disorder prediction | 22 | 36 | - | - | |
Ssu6g1492 | 1227 | MobiDBLite | consensus disorder prediction | 271 | 333 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu6g1492 | Ssu-Chr6 | 24500106 | 24518159 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu6g1492 | 922 | 1170 | Calmodulin-binding Proteins | AT3G56690 | 39.453 | 2.88e-41 | 163 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu6g1492 | - | - | gmx:100816731 | 2194.85 |