Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1492 atGGTTTCGACGAGACGCAGTGGATCTCTCTCTGCCAGCAATACCAAAAGATCTTCCTCCTCGGAAGATAAACCTCCTTCGCCGAAGCGTCAAAAGGTCGATAATGGCGGTTCGTCGGAGAAACCGGTGCCGCCGGCGGAGAATTCCAAGGATTTATGTACTCCGGAGCCCGTGCCTGATCCCGGAGAATGTGGCTCCGGCGATGCTCAGATCGCCGGAGCGGGTGCCGCCGATGGAGTGAGCTCCGGCAAGGGTGACGCTATGCCGGCTGTGCCTGTGACGGCACCGATTGCTGATGCCTCATGTCCGTCGTTGTCGTGGAGTATACATCAGAAACAGAATCCGAATATCGAGGGAGGGCTGTGGTGCAGGTTCTTGTCACAGTCTGCACAGAATCCTAATGTTGCTGTTTGCACACCCAATTTCACGATTGGTTCTAGTAGAAGTTGCAACTTTCCACTGAAGGATCAAACTATAAGTGGAAATTTATGCAAGATCAAACATACGCAGCGCGAGGGAAGTGCTGTAGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGGACGCATGTCAAGAAGAATACCAGCTGTGTGCTTAACTCGGGTGATGAAGTGGTTTTTGGTGTGCTTGGAAATCATTCTTATATTTTCCAACAACTAAATACTGAGGTTGCAGTTAGGGGTGCAGAAGTTCAAAGTGGTGTTGGGAAATTTCTGCCACTTGAAAGGAGAAGTGGAGACCCTTCAGCTGTGGCTGGGGCCTCTATTTTGGCTTCTCTTTCTAACATCAGACAGGACCTTAAAAGACGGAAATCTCCATCTCAGACCTCCAGTAAACCTCACCAGGGTACCGATGTCTCTAGTCATTCTGTTCTTCATGATTGTACAGAAATTGAACCTGATGGCTCAGAATCAGTTCCAAATGTGCGGAGTGATAAAGTAGCTGATGTTCGAACAAGTGACAAAAATTCAACAATCGATTGCAATCCAGATGCTGGTGCAGAGGCAGGCCATGTAAAACTCTCTGGGGTGAATGATTTCCTAAGGCCTTTCTTCAGGATCTTAGCTCAACCTAGTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGGAAGAAAGAAATGGGTTGCTGGATATGCAGGCTGCATCGACTTTAGGTCCATCTGTGCGCTGTGCAGTGTTCAAAGAAGACGTTCATGCTGCAATACTGGATGGAAAAGAAATTGATGTTTCTTTTGACAACTTCCCCTACTATTTGAGTGAGAATACAAAAAATGTCCTGGTGGCTGCTTGCTTTATGCACCTCAGGCATAAAGAACATGAAAAGTTTACTGCAGATCTTACAACCATAAACCCTCGTATTCTTCTCTCAGGACCTGCAGGGTCTGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAGTTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTACTCAAGGATGGATTTAATGCTGAAAAATCCTTCAGCTGCACTAAACAAAGTTCTCCAGCCACAGACATGGCTAGGAGCATGGATCCATTAGCTAGTGAAACAGAGACACCTAACTCTTCAAATGCACCTACATCATATGACTTTGAGTCTCAACCTAAGTTGGAAAATGATAACATGCCATCCACCTCTGGGACAGCTAAAAGTTGCTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTAGCATATATCAGACATCTTCAAGGGGACCGTCAAATGGAAGTCGGGGGAAGGTTGTCTTACTATTTGAAGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAACCAATACCTGATGGAGTTGATCTTGGTGGGGCCTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGTTTGGAAAGCAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCGTTGTTTGAGGTTGTTTTTAGTGAGAGCAGAAGTGCGCCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAATGGAGATTCATATTCATTTAAAAGTAAGCTTGAAAATCTTCCGGCCAATGTGGTCGTAATAGGTTCACACACTCAAAATGACAGTCGCAAGGAGAAGTCACATCCTGGTGGTTtgctttttacaaaatttggtaGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCAGATAGTTTTGGACGATTGCATGAAAGGGGGAAGGAAGTCCAGAAACCAAATAGAACTTTGACTAAGCTTTTcccaaataaaattacaattcacATGCCACAGGATGAGGCTCTTCTAGCATCATGGAAGCAGCAACTGGATCGAGATGTTGAGACTCTCAAAATCAAAGGAAATTTACATCACTTGCGCACAgtttTGGGACGTTGTGGAATGGAAAGTGAAGGACTTGAGACCTTATGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAAATAATTGGTTGGGCTTTAAGCCACCACCTCATGCAGAATTTGGATGCTAAGCCTGATTTGAAACTTATACTGTCGTGTGAGAGCATTCAGTATGGAATTGGGATCTTGCAGTCTATCCAGAACGAGTCTAAGAGCCTGAAGAAATCACTTAAGGATGTTGTAACagaaaatgaatttgaaaagaGGCTTTTGGCTGATGTTATTCCACCTAGTGACATTGATGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTGTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGTCCCCCTGGAACAGGTAAAACAATGCTCGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATACGTGAAAGCTGTTTTCTCTTTGGCGAGTAAAATTTCTCCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGAAGGGAAAACCCAGGGGAGCATGAGGCCATGCgaaagatgaaaaatgaattcatGGTGAATTGGGATGGCTTACGTACGAAGGATACTGAGCGAGTTCTTGTGCTGGCAGCCACTAACAGACCTTTTGACCTAGACGAGGCTGTCATAAGGCGGATGCCAAGAAGGTTGATGGTAAATTTGCCAGATGCTCCTAATAGAGCAAAGATATTGAAAGTTCTACTGGCAAAAGAGGAATTGTCTCCTGATGTTGATTTGGATGCAGTCGCAAGTATAACCGATGGATATTCCGGAAGTGATCTTAAGAATTTGTGTGTAACTGCAGCACACCGGCCTATTAAAGAGATCTTAGACAAGGAAAAAAAGGAACGTGCTGCTGCTCTAGCAGAAGGTCAACCAGCTCCAGCATTATGCAGCAGTGGGGACATCAGATCTTTAAACATGCAAGACTTTAAATATGCCCATCAACAGGTATGTGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAATAAAGAAAGCACTCAGCTATTTCATGTGA 3684 0.4264 MVSTRRSGSLSASNTKRSSSSEDKPPSPKRQKVDNGGSSEKPVPPAENSKDLCTPEPVPDPGECGSGDAQIAGAGAADGVSSGKGDAMPAVPVTAPIADASCPSLSWSIHQKQNPNIEGGLWCRFLSQSAQNPNVAVCTPNFTIGSSRSCNFPLKDQTISGNLCKIKHTQREGSAVAVLESTGSKGSVLVNGTHVKKNTSCVLNSGDEVVFGVLGNHSYIFQQLNTEVAVRGAEVQSGVGKFLPLERRSGDPSAVAGASILASLSNIRQDLKRRKSPSQTSSKPHQGTDVSSHSVLHDCTEIEPDGSESVPNVRSDKVADVRTSDKNSTIDCNPDAGAEAGHVKLSGVNDFLRPFFRILAQPSCKLKLSKSICKQVLEERNGLLDMQAASTLGPSVRCAVFKEDVHAAILDGKEIDVSFDNFPYYLSENTKNVLVAACFMHLRHKEHEKFTADLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGFNAEKSFSCTKQSSPATDMARSMDPLASETETPNSSNAPTSYDFESQPKLENDNMPSTSGTAKSCLFKLGDRVKFSCSSSCSIYQTSSRGPSNGSRGKVVLLFEDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSYSFKSKLENLPANVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHERGKEVQKPNRTLTKLFPNKITIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRTVLGRCGMESEGLETLCIKDQTLTNENAEKIIGWALSHHLMQNLDAKPDLKLILSCESIQYGIGILQSIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVLLAKEELSPDVDLDAVASITDGYSGSDLKNLCVTAAHRPIKEILDKEKKERAAALAEGQPAPALCSSGDIRSLNMQDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRIKKALSYFM 1227
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1492 1227 ProSitePatterns AAA-protein family signature. 1066 1085 IPR003960 GO:0005524|GO:0016887
Ssu6g1492 1227 Gene3D - 921 1202 IPR027417 -
Ssu6g1492 1227 CDD AAA 961 1094 - -
Ssu6g1492 1227 CDD FHA 142 222 IPR000253 GO:0005515
Ssu6g1492 1227 MobiDBLite consensus disorder prediction 519 568 - -
Ssu6g1492 1227 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 375 1227 - -
Ssu6g1492 1227 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 81 352 - -
Ssu6g1492 1227 SUPERFAMILY SMAD/FHA domain 110 222 IPR008984 GO:0005515
Ssu6g1492 1227 Gene3D - 121 230 - -
Ssu6g1492 1227 Coils Coil 883 903 - -
Ssu6g1492 1227 MobiDBLite consensus disorder prediction 280 295 - -
Ssu6g1492 1227 MobiDBLite consensus disorder prediction 1 87 - -
Ssu6g1492 1227 Pfam AAA+ lid domain 1116 1151 IPR041569 -
Ssu6g1492 1227 Pfam FHA domain 143 212 IPR000253 GO:0005515
Ssu6g1492 1227 Gene3D - 1095 1189 - -
Ssu6g1492 1227 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 375 1227 - -
Ssu6g1492 1227 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 81 352 - -
Ssu6g1492 1227 SMART AAA_5 959 1096 IPR003593 -
Ssu6g1492 1227 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g1492 1227 MobiDBLite consensus disorder prediction 538 568 - -
Ssu6g1492 1227 Pfam ATPase family associated with various cellular activities (AAA) 963 1092 IPR003959 GO:0005524|GO:0016887
Ssu6g1492 1227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 921 1201 IPR027417 -
Ssu6g1492 1227 MobiDBLite consensus disorder prediction 22 36 - -
Ssu6g1492 1227 MobiDBLite consensus disorder prediction 271 333 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu6g1492 Ssu-Chr6 24500106 24518159 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1492 922 1170 Calmodulin-binding Proteins AT3G56690 39.453 2.88e-41 163
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1492 - - gmx:100816731 2194.85
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1492 6 24500106 24518159 Ssu6g1492 6 24500106 24518159 ECH
Ssu6g1492 6 24500106 24518159 Ssu1g2360 1 65998506 66012388 PCT