Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2360 ATGGTTTCAACGAGGCGCAACAGTGGATCTTTCTCGAACGGCAACAAGAGGCCTTCGTCTTCCGAAGACAAGACTCCCTCTCCTTCCCCTAAGCGCCAAAAGGTCGACAATGGGGCCGCCACGTCGGAGAAACCGATGCCGCCGGCGGAAAATTCCAAGGAATTGAGTACGCCGGACCCCCCCACTGATCCCGGAGAATGCGGCCCTCAGGACACTCAGATCGCCGTCGCCGCCAGTCCCGACGGCAAGGTCGAGGCCACGCCGCCGATCGCCGATGATGCTTCACCGACTGTGGTGGCTGACAAACCTAGGGGTTCGTTCTCTTCTTGGAGTATATATCAGAAGCAAAACCCGAATTTCGAAGCTTCAGTTCCATGGTGCAGACTCTTGTCTCAGTCTGCgcagAATCCGAATGTTTTAATTTGCACACCCAACTTTACTATTGGCTCTAGTAGGAGTTGCAATTTTCCGCTGAAGGATCAGACTATAAGTGGGAATTTGTGCAAGATCAAGCATACACAGCGCGAGGGAAGTGCTGTGGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCGGTGGTAGTGAATGGGACGCACGTTAAGAAGAGTACCAGCTGTGTGCTTAACTCTGGGGACGAGGTGGTTTTTGGTTTGCTGGGGAATCATTCTTATATTTTTCAGCAAGTAAATACTGAAGTTGCAGTTAAGGGTGCAGAAGTTCAGAGTGGTGTTGGCAAGTTTTTGCAGATTGAGAGGAGGGCTGGAGACCCTTCAGCTGTGGCTGGAGCTTCTATTTTGGCTTCTCTTTCTAGCCTCAGACAGGATCTTACAAGATGGAAGTCTCCATCTCAGACTGCCAGTAAACCTCATCAGGGTACTGATGTTTCTGGTCATTCTGTTCTCCCTGATGGTACGGAAACTGAGCTCGATGGCCTGGAAGGCAACTCAGCTCCAAATGTAGGCACTGATAAAGCTGCTGATGTTGGAGCAAGCGACAAGAATTCGCCTATGGATTGCGATCCAGATGATGCAGGCACAGAGGCAGGCAATGTAAAAATCTCTGGGGTGAATGCTTTCCTAGGGCCTTTCTTCAGGATTCTAGCTGGATCTACTTGTAAACTGAAATTGAGCAAAAGTATCTGTAAACAGGTATTGTTGGAAGAAAGAAATGGGACGAGGGATGCGCAAGCTGCATCGACTTCGGGTACTTCTGTGCGCTGTGCAGTTTTTAAAGAAGATGTTCATGCTGCAATACTGGACGGGAGAGAAATGGAAGTGTCCTTTGACAACTTCCCATACTACTTAAGTGAGAATACAAAAAATGTCCTAATTGCAGCTTGCTTTATACACCTGAAGCATAAAGAACATGCAAAGTACACCACAGATCTTACAACCATTAACCCTCGTATTCTACTCTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAAGCACTTGCAAAATACTTTGGAGCTAAATTGCTCATCTTTGATAGCCATTCGCTTTTGGGTGGTTTATCTTCCAAGGAAGCTGAGCTGCTCAAAGATGGATTTAATGCTGAGAAATCCTGCAGCTGTGCCAAACAAAGTCCTATAGCCACAGACATGGCTAGGAGCATGGATCCATCAGCTAGTGAACCAGATACGCCTAACTCTTCAAATGCACCTACTTCATATGGCTTTGAGTCTCAACCTAAGTTGGAAGCTGATAATGTACCATCTACCTCTGGGACAGCTaaaaattgtgtgtttaaaCTAGGTGACCGGGTAAAATATAGCTGTTCATCTTCTGGTGGCTTGTATCAGACACCGTCTTCAAGGGGTCCAGCAAATGGAAGTCGGGGAAAGGTTGTCTTACTTTTTGATGATAATCCCTTGTCAAAAATTGGTGTAAGATTTGATAAACCCATACCTGATGGAGTTGATCTTGGAGGTGCCTGTGAGGCTGGTCAAGGATTTTTCTGTAATGtCACTGATCTTCGGTTGGAAAACAGTGGTGTTGAAGAACTCGACAAATTACTTATTAATACATTGTTTGAGgtTGTGGTTAGTGAGAGCAGAAATGAACCTTTCATTTTGTTCATGAAAGATGCGGAGAAGTCTATAGTAGGAAATGGAGatccattttcatttaaaagtaGGCTTGAAAATCTTCCGGACAATGTGGTGGTAATAGGTTCACACACTCACATTGACAATCGAAAGGAGAAGTCACATCCTGGGGGTTTGCTTTTTACAAAGTTTGGCAGTAATCAGACTGCCCTTCTTGATTTGGCTTTCCCTGATAGTTTTGGAAGATTGCATGATAGGGGGAAGGAGGTCGCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTAACAATTCACATGCCACAGGATGAGGCACTTCTAGCATCTTGGAAGCAGCAACTTGATCGAGATGTTGAGACTCTTAAAATCAAAGGAAATTTGCACAATTTACGCACAgtttTGAGCCGTTGTGGGATGGAATGTGAAGGACTTGAGACCTTGTGCATTAAGGATCAGACACTTACTATTGAGAATGCAGAGAAGATAGTTGGTTGGGCTTTAAGCCACCATCTCATGCAGAATGCTGAAACTGATCCTGATGCAAAGCTTGTGTTGTCTTGTGAGAGCATCCAGCATGGGATTGGGATCTTACAGGCTATCCAGAATGAGTCGAAAAGCCTGAAGAAGTCTCTTAAGGATATTGTAACAGAAAATGAGTTTGAAAAGAGGCTTTTGGCTGATGTTATTCCACCTAACGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACATTGAAGGAATTGGTTATGCTTCCTTTACAGAGGCCTGAGCTATTTTGCAAAGGGCAATTAACCAAGCCGTGCAAGGGCATCCTATTATTTGGTCCCCCTGGGACAGGTAAGACAATGCTTGCAAAGGCAGTTGCTACTGAAGCTGGTGCAAATTTCATCAACATTTCCATGTCAAGCATCACGTCTAAGTGGTTTGGTGAGGGTGAAAAATACGTGAAAGCTGTTTTTTCCCTGGCAAGTAAAATTGCTCCTAGCGTGATATTTGTCGACGAAGTTGATAGCATGTTGGGCAGGAGGGAAAATCCTGGGGAGCATGAGGCCATGCgaaagatgaaaaatgaattcatGGTGAACTGGGATGGCTTACGCACAAAGGATACTGAGCGAGTTCTTGTGCTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGATTAATGGTAAATTTGCCAGATGCTCCAAATAGAgcgaaaatattaaaagttatactgGCAAAAGAGGACTTGTCTTCTGATGTTGATATGGATGCAATTGCAAGTATGACTGATGGATATTCTGGAAGTGATCTTAAGAATTTATGTGTAACTGCTGCACACCGTCCAATTAAAGAGatattagaaaaggaaaaaaagGAACAGGCTGCTGCTCTAGCGGAAGGTAGACCTGCTCCAGCCTTAAGTGGAAGTGCAGATATCCGATCTTTAAACATGGAAGACTTTAAATATGCTCATCAACAGGTCTGTGCTAGTGTTTCCTCTGAATCCGTAAATATGACTGAGCTTCAACAATGGAATGAACTATATGGCGAAGGTGGTTCAAGAGTAAAAAGAGCACTCAGCTATTTCATGTGA 3711 0.4371 MVSTRRNSGSFSNGNKRPSSSEDKTPSPSPKRQKVDNGAATSEKPMPPAENSKELSTPDPPTDPGECGPQDTQIAVAASPDGKVEATPPIADDASPTVVADKPRGSFSSWSIYQKQNPNFEASVPWCRLLSQSAQNPNVLICTPNFTIGSSRSCNFPLKDQTISGNLCKIKHTQREGSAVAVLESTGSKGSVVVNGTHVKKSTSCVLNSGDEVVFGLLGNHSYIFQQVNTEVAVKGAEVQSGVGKFLQIERRAGDPSAVAGASILASLSSLRQDLTRWKSPSQTASKPHQGTDVSGHSVLPDGTETELDGLEGNSAPNVGTDKAADVGASDKNSPMDCDPDDAGTEAGNVKISGVNAFLGPFFRILAGSTCKLKLSKSICKQVLLEERNGTRDAQAASTSGTSVRCAVFKEDVHAAILDGREMEVSFDNFPYYLSENTKNVLIAACFIHLKHKEHAKYTTDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHSLLGGLSSKEAELLKDGFNAEKSCSCAKQSPIATDMARSMDPSASEPDTPNSSNAPTSYGFESQPKLEADNVPSTSGTAKNCVFKLGDRVKYSCSSSGGLYQTPSSRGPANGSRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEAGQGFFCNVTDLRLENSGVEELDKLLINTLFEVVVSESRNEPFILFMKDAEKSIVGNGDPFSFKSRLENLPDNVVVIGSHTHIDNRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVAKPNKTLTKLFPNKVTIHMPQDEALLASWKQQLDRDVETLKIKGNLHNLRTVLSRCGMECEGLETLCIKDQTLTIENAEKIVGWALSHHLMQNAETDPDAKLVLSCESIQHGIGILQAIQNESKSLKKSLKDIVTENEFEKRLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSSDVDMDAIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKEQAAALAEGRPAPALSGSADIRSLNMEDFKYAHQQVCASVSSESVNMTELQQWNELYGEGGSRVKRALSYFM 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2360 1236 Pfam ATPase family associated with various cellular activities (AAA) 972 1101 IPR003959 GO:0005524|GO:0016887
Ssu1g2360 1236 MobiDBLite consensus disorder prediction 1 99 - -
Ssu1g2360 1236 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 385 1236 - -
Ssu1g2360 1236 SUPERFAMILY SMAD/FHA domain 118 225 IPR008984 GO:0005515
Ssu1g2360 1236 MobiDBLite consensus disorder prediction 539 578 - -
Ssu1g2360 1236 Gene3D - 125 234 - -
Ssu1g2360 1236 Gene3D - 1104 1198 - -
Ssu1g2360 1236 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 385 1236 - -
Ssu1g2360 1236 Gene3D - 930 1211 IPR027417 -
Ssu1g2360 1236 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 77 356 - -
Ssu1g2360 1236 Pfam FHA domain 147 216 IPR000253 GO:0005515
Ssu1g2360 1236 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 77 356 - -
Ssu1g2360 1236 MobiDBLite consensus disorder prediction 277 299 - -
Ssu1g2360 1236 MobiDBLite consensus disorder prediction 546 563 - -
Ssu1g2360 1236 Coils Coil 892 912 - -
Ssu1g2360 1236 MobiDBLite consensus disorder prediction 1 36 - -
Ssu1g2360 1236 Pfam AAA+ lid domain 1125 1160 IPR041569 -
Ssu1g2360 1236 CDD AAA 970 1103 - -
Ssu1g2360 1236 MobiDBLite consensus disorder prediction 277 345 - -
Ssu1g2360 1236 ProSitePatterns AAA-protein family signature. 1075 1094 IPR003960 GO:0005524|GO:0016887
Ssu1g2360 1236 SMART AAA_5 968 1105 IPR003593 -
Ssu1g2360 1236 CDD FHA 126 226 IPR000253 GO:0005515
Ssu1g2360 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1209 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2360 Ssu-Chr1 65998506 66012388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2360 931 1183 Calmodulin-binding Proteins AT3G56690 40.385 1.59e-42 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2360 - - gmx:100780098 2239.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2360 1 65998506 66012388 Ssu1g2360 1 65998506 66012388 ECH
Ssu6g1492 6 24500106 24518159 Ssu1g2360 1 65998506 66012388 PCT