Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1470 ATGTTGCCTCCTATTCCTATCGATATCAACGGTATAAAAGATAAGCTGTCCTTTCAGTTGCGCCCTTGGCAGCGCTCCTTCCAATTCTGGGTTCGAGCCATTGACATTTACGCCGGATACaagGTGTGTCAAGTGAGAGTGAATTTCGTGAAAGATGCGCAGAAGCAGGAAGCAATGTGGGAGAGGCAGCACGAGCATGCTGCCGATAAGATTTTCGCCATGTGCTCCGACCTTGGAGGTTTCTTCCTCAAGATTGCTCAAATTATAGGGAAGCCCGATTTGGCCCCGGCAGCGTGGGTGAAAAGGCTTGTTACGCTGTGTGATAGGGCTCCTGCAACCCCATTTGATGTGGTGAAACTGGTGCTGGAGAGTGAGCTGGGACAGGGTGTTGAGGATGTGTTCGAGAGGTTCGATGTGGAACCCCTTGGTTCTGCTTCAATTGCTCAGGTTCATAGAGCAAGACTGAAAGGTGATACAGGTGATGTTGTTGTCAAGGTTCAACATCCTGGAGTTCAGGATCTGATGATGACAGATATCCATAACTTGCAAGCTTTTGCATTGTACATGCAAAAGACAGATATCAAATTTGATCTATATTCAGTGACCAAGGAAATGGAAAAACAGATTGGATATGAATTTGACTTCATGAGGGAGGCTGATGCGATGAAAAGGATTAGAAAGTTTTTgtatcaaaataacaaaaagactCCTGTTTTGGTGCCACAAGTAATACGAAATATGGTCACTAGAAGGGTCCTAGTTATGGAATATATTGATGGGATTCCAATAATGAACCTTGGTGATGAAATAGCAAAGAGAGGCATAAATCCTCGTGGTAAGGTTGCAGCAGCAGCAAAGCAGAAAATTCTTCAAAGCTTGACTCTAGCATATGGTCAAATGATTTTGAAAAGTGGATTCTTCCATGCAGATCCTCATCCAGGAAATATCCTGATTTGTAAAGGATCAGAGGTTGCCTTGCTAGACTACGGGCAGGTGAAGGATCTCCCAGAGCAGTTGAGGCTTGGCTATGCTAATCTAGTTCTTGCAATTGCTAATCGTGACCCATTAAGAGCTGCAGAGAGCTATAGGGAGCTTGGTATAGAAACCTTAAGCAACTGTGAAAATGAGCAACAGGAATTGTTTAAACTAGCAGAGACAATGTTTGACACAAAATTGCCTCCTGGGGTGGTAATGCTGCAACCTTTCTCAGAGGaatcttcaattaaaaaaattggtgttCAGGCTTTTCCAGAAGAACTGTTTTCTATACTTCGGACAGTGCATCTACTGAGGGGACTTAGCGTTGGACTTGGAATCAATTATTCTTGTGCAGAACAGTGGAGACCCCTTGCAGAAGAAGCTTTGTCCCAAGCTGGCAGATTAAAAGATAAGGATGTTAAGCTCAGAGGCAGCAAAAACGCagttaagtaa 1431 0.427 MLPPIPIDINGIKDKLSFQLRPWQRSFQFWVRAIDIYAGYKVCQVRVNFVKDAQKQEAMWERQHEHAADKIFAMCSDLGGFFLKIAQIIGKPDLAPAAWVKRLVTLCDRAPATPFDVVKLVLESELGQGVEDVFERFDVEPLGSASIAQVHRARLKGDTGDVVVKVQHPGVQDLMMTDIHNLQAFALYMQKTDIKFDLYSVTKEMEKQIGYEFDFMREADAMKRIRKFLYQNNKKTPVLVPQVIRNMVTRRVLVMEYIDGIPIMNLGDEIAKRGINPRGKVAAAAKQKILQSLTLAYGQMILKSGFFHADPHPGNILICKGSEVALLDYGQVKDLPEQLRLGYANLVLAIANRDPLRAAESYRELGIETLSNCENEQQELFKLAETMFDTKLPPGVVMLQPFSEESSIKKIGVQAFPEELFSILRTVHLLRGLSVGLGINYSCAEQWRPLAEEALSQAGRLKDKDVKLRGSKNAVK 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1470 476 ProSiteProfiles Protein kinase domain profile. 136 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1470 476 Pfam ABC1 atypical kinase-like domain 106 360 IPR004147 -
Ssu6g1470 476 PANTHER ABC1 FAMILY PROTEIN 10 470 - -
Ssu6g1470 476 SUPERFAMILY Protein kinase-like (PK-like) 108 333 IPR011009 -
Ssu6g1470 476 PANTHER - 10 470 - -
Ssu6g1470 476 SMART serkin_6 136 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g1470 476 CDD ABC1_ADCK3-like 106 361 - -
Ssu6g1470 476 Gene3D Transferase(Phosphotransferase) domain 1 131 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1470 Ssu-Chr6 24149892 24158621 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1470 K08869 - gmx:100813009 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1470 6 24149892 24158621 Ssu6g1470 6 24149892 24158621 ECH