Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1469 ATGGAAGGAGAAGAGGGGTCTCAGCAGCCACAGTTGGTGCTCGCCGACAAGCTATTCCTTCTCAGACAACCCGATGTGCAAGACATTGACAAGGTTCGCTACAAAGAGGATGTTTTCACTCACGTCAAGGACAACGATATGGTCCCTTTGTACGAAACCCTAATCGCCGATTCTGTATTGGACATGGATCGTGCCCTTTTGGACACCATGCGCGCTAAAATTGACGACGAGCTCAACAAGCTCGACGAAAAGATTGCTGATGCTGAGGAAAACTTAGGAGAGAGTGAAGTTCGTGAGGCTCACTTGGCAAAATCCATGTTTTTCATCCGGATTGGGGACAagGAAAAAGCCTTGGAACATCTCAAGGTAACAGAAACCAAGACAGTTGCAGTTGGCCAGAAGATGGACCTGGTGTTTTATACATTGCAGCTTGGTTTATTTGACATGGATTTTGATCTCATTTCCAAAAGTATTGACAAAGCCAAAAACTTGTTTGAAGAAGGTGGTGATTGGGAAAGGAAGAATAGGCTGAAAGTGTATGAAGGCCTGTACTGCATGTCCACACGAAATTTCAAGAAGGCTGCCAAGTTGTTTTTGGATTCTATTTCAACTTTTACAACCTATGAACTTTTTCCATATGAcacctttatattttatacggTTTTGACAAGCATTATATCGTTGGATAGAGTTTCCCTAAAGCAAAAGGTAGTAGATGCTCCAGAGATCTTGACAGTAATTGGCAAAATCCCATATCTTTCAGAGTTTTTGAACTCCTTATATGATTGTCAATACAAGTCTTTTTTCTCAGCGTTTGCTGGCCTGACAGAGCAAATTAAGTTGGACCGCTATCTGCATCCACACTTCCGATATTACATGAGGGAGGTCAGAACAGTTGTTTATTCCCAATTTTTGGAATCCTATAAGAGTGTGACAATTGAAGCCATGGCAAAAGCCTTTGGAGTGACAGTGGATTTCATTGATCTGGAGCTATCACGTTTTATTGCAGCAGGGAAACTTCATTGTAAGATTGACAAAGTTGCAGGCGTTCTTGAAACTAACCGCCCTGATGCTAAGAATGCTCTTTACCAAGCTACTATTAAACAAGGGGACTTCCTATTGAATCGGATCCAGAAATTGTCACGTGTGATCGATCTTTAG 1161 0.4134 MEGEEGSQQPQLVLADKLFLLRQPDVQDIDKVRYKEDVFTHVKDNDMVPLYETLIADSVLDMDRALLDTMRAKIDDELNKLDEKIADAEENLGESEVREAHLAKSMFFIRIGDKEKALEHLKVTETKTVAVGQKMDLVFYTLQLGLFDMDFDLISKSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLHPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVDFIDLELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1469 386 SMART PINT_4 287 370 IPR000717 -
Ssu6g1469 386 Coils Coil 67 98 - -
Ssu6g1469 386 PANTHER OS02G0600100 PROTEIN 2 386 - -
Ssu6g1469 386 PANTHER 26S PROTESOME SUBUNIT 6 2 386 IPR019585 -
Ssu6g1469 386 Gene3D - 24 337 - -
Ssu6g1469 386 Pfam PCI domain 254 354 IPR000717 -
Ssu6g1469 386 Pfam 26S proteasome subunit RPN7 63 236 IPR045135 -
Ssu6g1469 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 287 370 - -
Ssu6g1469 386 ProSiteProfiles PCI domain profile. 190 358 IPR000717 -
Ssu6g1469 386 SUPERFAMILY "Winged helix" DNA-binding domain 282 363 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1469 Ssu-Chr6 24141067 24145791 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1469 K03037 - gmx:100810692 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1469 6 24141067 24145791 Ssu6g1469 6 24141067 24145791 ECH