Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1467 ATGTTGCGTTACCAAATGCTTGATTCAGCACCCTCTTTCCATGACTCCCTCAAGGCACTTGAGGCTGACATCCAACATGCCAATGTGCTGGCAGCTTCTATCCCAAGGGGCAAGGGCATGACTTGCCTTCAAATGAAGTTAGTTTACAATAAACTGGCAcccctttttctgtttttatttcaatGGATGGATTACTCGTGCTCGTGTCTACCTTCAAGTCATTTCAATCTTTTCCGTGTAGTTGTGTACAAGGTGCATACCAATGGGAAGTCAGATATCTATTCTAGTGGAAGGAAAGCAACCATAAGAGAGTTCTACAGTGTTATATTACCTTCTCTCCAGCGCCTTCATGGTGATTTAGTAGAGGCTGACACCATTCAAGAAAAAGATCACAGCATTGAGATGATTGTCAATCGGAACGAGGAGGATAAGAGGAAGCCTTCTGATATGGActtggagagagaaaatgagtgtGGCATTTGCTTAGAGTCTTGCACCAAAATGGTTTTGCCTAATTGCTGCCACGCTATGTGTATAAATTGTTACAATGACTGGAACACAAGATCAGAATCTTGTCCATTTTGCCGGAGAAGTTTACGGAGAGTTAAATCGGGGGATTTGTGGGTTCTAACATGCAGCAGAGATGTGATTGATATGCAAACCATATACAGAGAAGATATGTTGCGTCTCTGTCTATTTGTAAACAATCTTCCCGAATATACCCCAGATGCTCTTTTCCTTATATATTACGAGTACTTaatataa 765 0.3922 MLRYQMLDSAPSFHDSLKALEADIQHANVLAASIPRGKGMTCLQMKLVYNKLAPLFLFLFQWMDYSCSCLPSSHFNLFRVVVYKVHTNGKSDIYSSGRKATIREFYSVILPSLQRLHGDLVEADTIQEKDHSIEMIVNRNEEDKRKPSDMDLERENECGICLESCTKMVLPNCCHAMCINCYNDWNTRSESCPFCRRSLRRVKSGDLWVLTCSRDVIDMQTIYREDMLRLCLFVNNLPEYTPDALFLIYYEYLI 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1467 254 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Ssu6g1467 254 SMART ring_2 158 195 IPR001841 -
Ssu6g1467 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 205 IPR013083 -
Ssu6g1467 254 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Ssu6g1467 254 PANTHER RING FINGER PROTEIN 41, 151 9 254 - -
Ssu6g1467 254 PANTHER OS01G0905700 PROTEIN 9 254 - -
Ssu6g1467 254 SUPERFAMILY RING/U-box 141 201 - -
Ssu6g1467 254 Pfam Ring finger domain 156 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1467 Ssu-Chr6 24102517 24104791 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1467 - - jre:109018365 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1467 6 24102517 24104791 Ssu6g1467 6 24102517 24104791 ECH