Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1466 ATGGCTCCTTGTGTGGCATCCATGTCTTGTACCGTCCTCCTCATTACCATCATCTGCACACTGTCCTTTGTTCTGTCAGTTGCTTCTGCAACAACAACTGCGGAGGGAGGGACAAGACCCTTCAAAAGGGTCTATGCCTTTGGGGACTCGTTTACCGACACTGGCAACACCCAGAATGCCGAAGGTCCAAGTGGGTTTGGCCATGTGTCAAACTCTCCATACGGCACCACCTTCTTTAACCACTCCACCAACAGGTACTCCGATGGCAGGCTCGTCATTGACTTTGTGGCCGAAGCACTGTCACTGCCCTACTTGCCCCCCTACCGTCACAGCAAAGGCAACGACACTTTCGGTGTTAACTTTGCCGTTGCTGGTTCTACAGCCATAAACCACTTGTTCTTTGTCAAGCACAACCTCTCCCTTGACATCACTCCTCAGTCCATCCAAACCCAGATGATATGGTTCAACAGGTACCTAGAGAGCCAGGAATGCCAAGAATCAAACTGCAAAGATTTTGATGACACTCTATTTTGGTTTGGGGAGATTGGAGTCAATGACTATGCCTACACTCTTGGATCTTCGGTCTCAGATGACACCATAAGGAAGCTTGCAGTCAGCACTGTCTCGGAAGCTTTACAGACATTGCTTGAGAAGGGTGCCAAGTACCTAGTTGTGCAGGGTTTGCCACTATCTGGGTGCTTGACATTGTCCATGTATCTGGCTCCTCCAGATGATAGGGATGACATTGGATGTGTGAAAAGTGTCAACAACCAAAGCTACCACCACAACCTTGTGTTGCAAGCCAAATTACAGGAATTCAGGAAACAGTACCCCCAAGCTGTCATAGTTTATGCTGATTACTTTAATGCCTACCGCACTGTCATGAAGAATCCCAGCAAGTATGGATTCAAAGAGACCTTCAATGTTTGCTGTGGATCAGGAGAACCACCTTACAATTTTACTGTGTTTGCCACATGCGGCACACCTAACGCCACCGTCTGCGCAAACCCTTCTCAGTACATCAATTGGGATGGTGTTCACCTCACGGAGGCCATGTATAAAGTTATTTCTAGTATGTTTCTGCAAGGAAACTTCACCCAACCTCCGTTCAATTGtttattgggaaaaaaaaagagggtggGGTGA 1146 0.4677 MAPCVASMSCTVLLITIICTLSFVLSVASATTTAEGGTRPFKRVYAFGDSFTDTGNTQNAEGPSGFGHVSNSPYGTTFFNHSTNRYSDGRLVIDFVAEALSLPYLPPYRHSKGNDTFGVNFAVAGSTAINHLFFVKHNLSLDITPQSIQTQMIWFNRYLESQECQESNCKDFDDTLFWFGEIGVNDYAYTLGSSVSDDTIRKLAVSTVSEALQTLLEKGAKYLVVQGLPLSGCLTLSMYLAPPDDRDDIGCVKSVNNQSYHHNLVLQAKLQEFRKQYPQAVIVYADYFNAYRTVMKNPSKYGFKETFNVCCGSGEPPYNFTVFATCGTPNATVCANPSQYINWDGVHLTEAMYKVISSMFLQGNFTQPPFNCLLGKKKRVG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1466 381 Pfam GDSL-like Lipase/Acylhydrolase 44 358 IPR001087 GO:0016788
Ssu6g1466 381 SUPERFAMILY SGNH hydrolase 41 361 - -
Ssu6g1466 381 PANTHER LIPASE/HYDROLASE FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 12 378 - -
Ssu6g1466 381 CDD SGNH_plant_lipase_like 44 364 IPR035669 -
Ssu6g1466 381 Gene3D SGNH hydrolase 33 364 IPR036514 -
Ssu6g1466 381 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 12 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1466 Ssu-Chr6 24098890 24100340 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1466 44 363 Acyl Lipid Metabolism Gene Families AT4G10950 26.586 5.21e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1466 - - gmx:100810163 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1466 6 24098890 24100340 Ssu6g1466 6 24098890 24100340 ECH