Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1459 atggaaataaaaaaagttctaTGGGTTGCTCTATCCTTTGCTTTGGTTCTTGGATTGGGCAAGAGCTTTGATTTCAACGAGAAGGACTTAGAATCCGAGGAAAGGTTGTGGGATTTGTACGAGAGATGGAGGAGCCACCACACGGTTTCTCGAAGCCTGGATGAGAAGCACAACCGATTCAACGTGTTCAAAGCCAACGTGATGCATGTCCACAATACCAATAAAATGGACAAGCCGTACAAGCTGAAGTTGAACAGGTTCGCTGACATGACCAACCATGAATTCAGGAGCATCTATGCTGGCTCCAAGGTGAATCACCACAGAATGTTCCGAGGCACGCCTCGAGGGAATGGTACTTTCATGTATGAGAACGTTGACAGCGTTCCTTCTTCGGTGGATTGGAGGAAGAAAGGCGCTGTCACTGGTGTAAAGGATCAAGGCCAATGCGGTAGTTGCTGGGCGTTTTCAACTGTTGCAGCTGTTGAAGGTATTAACCAAATCAAGACACATAAGCTAGTGTCCTTGTCTGAGCAAGAACTTGTAGATTGTGACACTACAGAGAATGAAGGATGCAATGGTGGGTTAATGGAAATTGCATTCGAGTTTATCAAGCAACATGGTATAACAGCAGAAAACAATTACCCTTATAAAGCAAAAGACGGAACTTGTGATGTATCAAAGGAGAATGAACCCGCAGTGTCAATTGATGGCCATGAGAATGTCCCCGTAAACAATGAGGCCGCATTGCTCAAAGCTGTTGCCAATCAACCTGTATCGGTAGCCATTGAAGCCGGAGGATATGACTTCCAGTTCTACTCACaggGAGTGTTTACGGGAGACTGTGGCACTGATCTGGATCATGGAGTAGTAATTGTGGGTTATGGAACAGCTCAGGATGGAACCAAATATTGGATAGTGAAGAACTCATGGGGATCCGAATGGGGAGAAGAGGGTTACATTAGAATGCAAAGGAGCATATCTGACGGGAAAGGTCTATGTGGCATAGCAATGGAGGCTTCCTATCCAATCAAAAAGTCCTCTACCAAACCAACGAAGCATTCATCATTTCCTAAAGACGAGCTTTAA 1086 0.4438 MEIKKVLWVALSFALVLGLGKSFDFNEKDLESEERLWDLYERWRSHHTVSRSLDEKHNRFNVFKANVMHVHNTNKMDKPYKLKLNRFADMTNHEFRSIYAGSKVNHHRMFRGTPRGNGTFMYENVDSVPSSVDWRKKGAVTGVKDQGQCGSCWAFSTVAAVEGINQIKTHKLVSLSEQELVDCDTTENEGCNGGLMEIAFEFIKQHGITAENNYPYKAKDGTCDVSKENEPAVSIDGHENVPVNNEAALLKAVANQPVSVAIEAGGYDFQFYSQGVFTGDCGTDLDHGVVIVGYGTAQDGTKYWIVKNSWGSEWGEEGYIRMQRSISDGKGLCGIAMEASYPIKKSSTKPTKHSSFPKDEL 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1459 361 SMART Inhibitor_I29_2 40 95 IPR013201 -
Ssu6g1459 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 285 295 IPR025660 -
Ssu6g1459 361 Pfam Cathepsin propeptide inhibitor domain (I29) 40 95 IPR013201 -
Ssu6g1459 361 PANTHER KDEL-TAILED CYSTEINE ENDOPEPTIDASE CEP1 20 350 - -
Ssu6g1459 361 PRINTS Papain cysteine protease (C1) family signature 287 297 IPR000668 GO:0006508|GO:0008234
Ssu6g1459 361 PRINTS Papain cysteine protease (C1) family signature 303 309 IPR000668 GO:0006508|GO:0008234
Ssu6g1459 361 PRINTS Papain cysteine protease (C1) family signature 146 161 IPR000668 GO:0006508|GO:0008234
Ssu6g1459 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 303 322 IPR025661 -
Ssu6g1459 361 CDD Peptidase_C1A 129 342 IPR039417 -
Ssu6g1459 361 Gene3D Cysteine proteinases 17 345 - -
Ssu6g1459 361 Pfam Papain family cysteine protease 128 343 IPR000668 GO:0006508|GO:0008234
Ssu6g1459 361 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 146 157 IPR000169 -
Ssu6g1459 361 SMART pept_c1 128 343 IPR000668 GO:0006508|GO:0008234
Ssu6g1459 361 SUPERFAMILY Cysteine proteinases 34 343 IPR038765 -
Ssu6g1459 361 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 20 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1459 Ssu-Chr6 23934705 23936818 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1459 K16292 - gmx:100806581 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1459 6 23934705 23936818 Ssu6g1459 6 23934705 23936818 ECH
Ssu6g1459 6 23934705 23936818 Ssu1g2315 1 65126158 65127820 PCT