Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1458 ATGGCGAAAGCCGGTAAGTCGCAAGAAGAAGTTGCGAGTGAAGCTATCAAACATGCTTTGAAGGCACTGCGGAAGCGCCATTTGCTCGAAGAAGCCGCTCATACTCCCGCTGTTCTAGCTCTTTCTAGACCCATCGCTTCTCAGGGCTCTGAGTGGAAAGAGAAAGCAGAAAATCTTCAAGTGGAACTTCAGCAATGCTACAAAGCTCAATCACGGCTGTCTGAGCAACTTGTTGTGGAAGTAGCTGAGTCCAGAGCTTCAAAAGCGTTGGTTCAAGAGAAGGAAAATGCAGTGGCTGATCTGCAAAAGGAGTTGACCGAATTGAGGGACGAGTGCTCCCAGTTAAAGTTGGACTTGGAAGAAAAGGTTAAATCTCTAGAAGTGGTTGTCAGTGAGAATTCTGAACTTAAGGCCCAACTGGAGCAGATGACTACTAAAGCCAATAAAGCTGAAGCTGAAAATAAGATGTTGATTGACCGCTGGATGTTAGAAAAGATGAAGGATGCTGAACGCCTAAATGAGGCCAATGCACTGTATGAAGACATGGTTGAGAAACTAAAGGCCAGTGGTTTAGAACAACTTGCAAGGCAGCAGGTGGATGGTATAGTTCGCCAAAGTGAAGAAGGtgctgaattttttttagagtcaAACATCCCTTCCACATGCAAATACAGGCTAAGTGCACATGAAGGTGGTTGTGCTTCCATGTTGTTTGAGTACAATTCTGGTAAATTGATTACCGGGGGACAGGATCGGTCAGTTAAAATGTGGGATACAAATACAGGATCCTTAAGTTCTACTCTTCATGGCTGCCTTGGCTCAGTATTGGATCTCACAATCACCCATGATAACCGATCTGTCATTGCGGCTAGCAGCTCAAACAACTTGTATGTATGGGATGTCAACTCAGGCCGTGTCCGTCATACCCTTACTGGCCACACAGATAAAGTTTGTGCTGTTGATGTCAGCAAGATTTCAAGTCGTCACGTTGTCAGTGCTGCTTATGATCGTACGATAAAAGTTTGGGACCTGGTGAAAGGTTACTGCACAAACACAATCATTTTTCACAGCAACTGCAATGCTCTTTCCTTCAGCATGGATGGTCAGACCATATTTTCGGGACATGTTGATGGTAATCTTCGGCTATGGGACATTCAGAGTGGAAAGCTACTCAGCGAGGTTGCTGCACATTCACTTGCTGTCACATCAATATCCCTTTCTCGAAATGGAAATGTTGTACTGACCAGTGGAAGAGACAATTTGCACAATTTGTTTGATGTGCGATCTCTGGAAGTTTGTGGCACATTAAAAGCCATGGGAAACAGAGTGGCTTCTAATTGGAGTCGCTCCTGTATTAGTCCAGATGACAATCACGTTGCTGCTGGGTCTGCTGATGGATCTGTCTATATTTGGTCAGTATCTAAAGGTAATATAGTCAGTACTCTAAAGGAACACAGTTCTTCTGTTTTGTGTTGTAGGTGGAGCGGGATTGGAAAACCCCTAGCTTCAGCTGAAAAGAATGGGATTGTTTGCGTTTGGACATAA 1545 0.4395 MAKAGKSQEEVASEAIKHALKALRKRHLLEEAAHTPAVLALSRPIASQGSEWKEKAENLQVELQQCYKAQSRLSEQLVVEVAESRASKALVQEKENAVADLQKELTELRDECSQLKLDLEEKVKSLEVVVSENSELKAQLEQMTTKANKAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVEKLKASGLEQLARQQVDGIVRQSEEGAEFFLESNIPSTCKYRLSAHEGGCASMLFEYNSGKLITGGQDRSVKMWDTNTGSLSSTLHGCLGSVLDLTITHDNRSVIAASSSNNLYVWDVNSGRVRHTLTGHTDKVCAVDVSKISSRHVVSAAYDRTIKVWDLVKGYCTNTIIFHSNCNALSFSMDGQTIFSGHVDGNLRLWDIQSGKLLSEVAAHSLAVTSISLSRNGNVVLTSGRDNLHNLFDVRSLEVCGTLKAMGNRVASNWSRSCISPDDNHVAAGSADGSVYIWSVSKGNIVSTLKEHSSSVLCCRWSGIGKPLASAEKNGIVCVWT 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1458 514 Coils Coil 84 160 - -
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 226 267 IPR001680 GO:0005515
Ssu6g1458 514 Gene3D - 358 514 IPR015943 GO:0005515
Ssu6g1458 514 CDD WD40 222 513 - -
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 482 514 - -
Ssu6g1458 514 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 310 352 IPR001680 GO:0005515
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 226 263 - -
Ssu6g1458 514 ProSitePatterns Trp-Asp (WD) repeats signature. 330 344 IPR019775 -
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 453 481 IPR001680 GO:0005515
Ssu6g1458 514 PANTHER AUTOPHAGY-RELATED 16, ISOFORM F 8 514 - -
Ssu6g1458 514 Coils Coil 169 189 - -
Ssu6g1458 514 SMART WD40_4 387 426 IPR001680 GO:0005515
Ssu6g1458 514 SMART WD40_4 429 472 IPR001680 GO:0005515
Ssu6g1458 514 SMART WD40_4 261 300 IPR001680 GO:0005515
Ssu6g1458 514 SMART WD40_4 303 343 IPR001680 GO:0005515
Ssu6g1458 514 SMART WD40_4 475 514 IPR001680 GO:0005515
Ssu6g1458 514 SMART WD40_4 346 384 IPR001680 GO:0005515
Ssu6g1458 514 SMART WD40_4 219 258 IPR001680 GO:0005515
Ssu6g1458 514 SUPERFAMILY WD40 repeat-like 217 513 IPR036322 GO:0005515
Ssu6g1458 514 Gene3D - 214 357 IPR015943 GO:0005515
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 482 514 IPR001680 GO:0005515
Ssu6g1458 514 Pfam Autophagy protein 16 (ATG16) 46 173 IPR013923 -
Ssu6g1458 514 Gene3D - 90 162 - -
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 429 IPR001680 GO:0005515
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 268 309 IPR001680 GO:0005515
Ssu6g1458 514 PANTHER AUTOPHAGY PROTEIN 16-LIKE 8 514 IPR045160 GO:0000045
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 310 344 - -
Ssu6g1458 514 PRINTS G protein beta WD-40 repeat signature 330 344 IPR020472 -
Ssu6g1458 514 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Ssu6g1458 514 PRINTS G protein beta WD-40 repeat signature 245 259 IPR020472 -
Ssu6g1458 514 ProSitePatterns Trp-Asp (WD) repeats signature. 245 259 IPR019775 -
Ssu6g1458 514 ProSiteProfiles Trp-Asp (WD) repeats profile. 361 393 IPR001680 GO:0005515
Ssu6g1458 514 Pfam WD domain, G-beta repeat 477 513 IPR001680 GO:0005515
Ssu6g1458 514 Pfam WD domain, G-beta repeat 222 258 IPR001680 GO:0005515
Ssu6g1458 514 Pfam WD domain, G-beta repeat 451 472 IPR001680 GO:0005515
Ssu6g1458 514 Pfam WD domain, G-beta repeat 349 384 IPR001680 GO:0005515
Ssu6g1458 514 Pfam WD domain, G-beta repeat 306 343 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1458 285 499 Miscellaneous Gene Families AT5G08390 23.611 2.52e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1458 K17890 - gmx:100778336 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1458 6 23919910 23922327 Ssu6g1458 6 23919910 23922327 ECH