Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g1456 ATGAATGGCTCCACAACCCTCACACACCACTGCGTCACTTCCCTCAAAACCCTGACACCCCACATCACCTGCCTCGCGGTCCACCGAAACCTCCTCTACGCCGCATCCCTCAACCTCATCAACGTCTTCGACCTCTCCCATTACGCCCACATCGACGCCTTCAATGGAAGCCCCGTGTCAGGGTTCGTCAAGTCCATCGCCTTCAGCGGTTCAAGGGTCTTCACCGCTCACCAAGACTGCAAGATTCGCGTGTGGCTCATCACCCCCTCGAAACGACACCGTCTCCTCTCGTCCCTCCCCACCGTAACGGACCTTTTGCGCCGCTGCATCGTTCCCCGAAACTACGTCAGCGTTCGGCGCCACAAGACGAGGCTCTGGATCCAACATTGCGACACCGTGTCCGGTTTAGCGGTGAACGAGAGCCTCATGTATTCGGTTTCGTGGGACAAGAGCTTTAAGGTTTGGGACCTGTTTGGTTACCGGTGTTTGGAGTCCGTCAAGGCGCACGACGACGCGATCAACGCCGTCGCCGTTAACGGTGACGGCACCGTTTACACGGCCTCCGCGGATGGGAGCATCAAGGTTTGGAAGAGGGACGGCGAGGCGAAACGGCACGCGTTGGTGAGCACCGTAGGGAAGCAGAAGTCAACGGTCAATGCGCTTGCGTTGGATGGCGATGATGGCGCGGCGTTGTTTTCCGGTGGCTGCGACGGCGCGATCTGCCGGTGGGAGTGGAGGGGCGGGGAAAACGGCGTCGCGAAGATGGAAAGGTTGCGGGGTCATGGTGGGGCCATACTGTGTCTGATCCACGTGGCAGGTTTGTTGGCGAGTGCGTCAGCGGATCTAACGGTTAGGATCTGGCAGCGGGAAAGAGGCGGTAGTGGGTATTGTTGCAGGGCAGTGTTGGAAGGGCACGAGAAACCGGTGAAGTCGTTGGTGGCATTTTCGGGCGGGGAAGGTGACTCAAACGGCGTCGTTACGCTCTTCAGTGGAAGCCTTGACGGGGAGATTAAGGTGTGGGAGGTGTTTGGTCTGGTTTGA 1041 0.5889 MNGSTTLTHHCVTSLKTLTPHITCLAVHRNLLYAASLNLINVFDLSHYAHIDAFNGSPVSGFVKSIAFSGSRVFTAHQDCKIRVWLITPSKRHRLLSSLPTVTDLLRRCIVPRNYVSVRRHKTRLWIQHCDTVSGLAVNESLMYSVSWDKSFKVWDLFGYRCLESVKAHDDAINAVAVNGDGTVYTASADGSIKVWKRDGEAKRHALVSTVGKQKSTVNALALDGDDGAALFSGGCDGAICRWEWRGGENGVAKMERLRGHGGAILCLIHVAGLLASASADLTVRIWQRERGGSGYCCRAVLEGHEKPVKSLVAFSGGEGDSNGVVTLFSGSLDGEIKVWEVFGLV 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g1456 346 PRINTS G protein beta WD-40 repeat signature 328 342 IPR020472 -
Ssu6g1456 346 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Ssu6g1456 346 PRINTS G protein beta WD-40 repeat signature 275 289 IPR020472 -
Ssu6g1456 346 Pfam WD domain, G-beta repeat 161 197 IPR001680 GO:0005515
Ssu6g1456 346 Pfam WD domain, G-beta repeat 258 287 IPR001680 GO:0005515
Ssu6g1456 346 Pfam WD domain, G-beta repeat 298 340 IPR001680 GO:0005515
Ssu6g1456 346 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 197 IPR001680 GO:0005515
Ssu6g1456 346 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 166 197 - -
Ssu6g1456 346 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 7 342 - -
Ssu6g1456 346 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 7 342 IPR045182 -
Ssu6g1456 346 SUPERFAMILY WD40 repeat-like 8 340 IPR036322 GO:0005515
Ssu6g1456 346 Gene3D - 4 106 IPR015943 GO:0005515
Ssu6g1456 346 Gene3D - 112 344 IPR015943 GO:0005515
Ssu6g1456 346 SMART WD40_4 204 244 IPR001680 GO:0005515
Ssu6g1456 346 SMART WD40_4 119 156 IPR001680 GO:0005515
Ssu6g1456 346 SMART WD40_4 295 341 IPR001680 GO:0005515
Ssu6g1456 346 SMART WD40_4 47 86 IPR001680 GO:0005515
Ssu6g1456 346 SMART WD40_4 251 288 IPR001680 GO:0005515
Ssu6g1456 346 SMART WD40_4 8 44 IPR001680 GO:0005515
Ssu6g1456 346 SMART WD40_4 159 197 IPR001680 GO:0005515
Ssu6g1456 346 ProSitePatterns Trp-Asp (WD) repeats signature. 328 342 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g1456 Ssu-Chr6 23857837 23858877 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g1456 156 341 Acyl Lipid Metabolism Gene Families AT3G18860 25.654 1.78e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g1456 - - aprc:113874855 609.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1456 6 23857837 23858877 Ssu6g1456 6 23857837 23858877 ECH