LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu6g1442	ATGGCCGTGACTGTGAACACCACTGTCTCCACCCCTACCCATACCACTTCCACCTCCTCCATCTTTTCAATCTCACGGAACTCCAAACCCTTCATCCTCCGACCCCTCAAACGGCACCTCCCCTTGCTCGCGCCCCTCAAATGCGTCCAACCCCGTTCAGCTTCAACCCCGTCCAAGCCGAACCCTATTTCCTGCTCCGCGCTCACTTCCTCCCCTTCCCAAACCTCGGAGCTCGTCGTTCCTTCGAAGCTGCAGTACCTGGCGGAGGAGTTCCGGGCCCTGCGGGAGCCGGTGGAGCGGGTGAAGCGGCTGCTGCACTACGCGGCGCTGATGGCTCCCATGGAGGACTCGGGTCGGGTCGACGCGAACCGGGTCATGGGCTGCACCGCCAGGGTGTGGGCGGATGTGAGGATCGACGAGGAGGGGAAGGTGAGGGTGGCGGCGGACAGCGACTCGGAGATTACGAGGGGGTTCTGCGCGTGTTTGGTTTGGGTGCTCGATGGGTCCGAGGTAGAGGAGGTTTTGAAAGTGACGAGCGACGATTTGGTGGGTCTGAATGTAGGGTTGCCCGGGGCAGGGGGGAGTGGGCGTTCGAGGGTGAACACGTGGCACAACGTGCTGGTTAACATGCAGAAGAGGACCAAGCAGTTGGTGGCGCAGAGGGAAGGGAAGGTTCCGTTTGAGCCTTTTCCCTCGTTGGTAGTTTCTGCTGATGCGGTTTTTCCCAAGGGTAGCTACGCTGAAGCCCAGGCAAAATATCTGTTCCCTAATGAGTTAAAAGTTAATGAACTAGTTAATGTGCTGAAGGAGAAGAAAATCGGTGTTGTTGCACACTTTTACATGGATCCTGAGGTCCAAGGCATTTTAACTGCTGCTCAGAAGCAGTGGCCACATATCCATATATCTGATTCACTGGTCATGGCAGATACAGCAGTCAAAATGGCAAAAGCTGGTTGCCAATTCATAACAGTGCTAGGTGTAGATTTTATGTCAGAAAATGTCCGTGCCATCCTTGATCAAGCTGGTTTTAGTGAGGTTGGTGTGTATAGGATGTCAAATGAGCGTATTGGCTGTTCTCTGGCTGATGCTGCAGCTACTCCTACTTATATGGAGTATCTTAAGGCTGCTTCTAGGTCTACTTCTTTGCATGTCATATACATTAACACTAAGTTAGAGACAAAGGCATATGCTCACGAGCTTGTGCCTACAATAACCTGTACTTCATCAAACGTTGTCCAGACTATCCTACAGGCATTTGCTCAAGTTCCAGATTTGAGCATATGGTATGGACCTGATTCTTACATGGGTGCAAATATTAAAGAATTGTTCCaacaaatgacaaaaatgaCCGATGAAGAGATTGCTGCGATACATCATGAGCACAGTCAAGACTCTATTAGATCATTACTACCTCGACTTCACTATTATCAGGATGGGACATGCATGGTTCACCATCTATTTGGCCATGAAGTTGTggagaagataaaagaaatgtaTTGTGATGCATTCCTTACTGCCCATCTTGAAGTACCCGGAGAGATGTTTTCATTGGCAATGGAAGCAAAGAGAAGGGGAATGGGCGTAGTAGGCTCCACACAGAATATTTTGGATTTCATAAAGGATAGGGTTCAGGAAGCTTTGGATAGAAATATAAATGATCATCTCCAATTTATTTTAGGAACAGAATCAGGGATGGTGACGTCAATTGTAGCAGCAATTCGTAGTTTGTTGGAGCCTGCAAAATCCTCTTCTCAAAGAGCAAAAGTTACTGTTGAAATAGTCTTTCCAGTTTCGTCAGACTCAATCTCAAAAACAACCTCAAGTTTATCCTCAGGTCTTCCTTCTGCCAAAGTGGGTGATATCATACTCCCTGTTGTACCAGGAATAGCTAGCGGGGAGGGTTGTTCTATTCATGGTGGCTGTGCATCTTGTCCATACATGAAGATGAATTCTCTTAGCTCACTCCTGAAAGTTTGCCATCACCTACCCGATGAAGAAAATATCCTTTCTGCATACAAGGCGGAGCAATTTAAGTTGCAAACTCCAAATGGGAAATCAGTGGCAGATGTTGGATGTGAACCAATTTTGCACATGAGGAACTTCCAGGCTGCTAAAAAGCTTCCAGAGAAGCTCGTTGATCAGATTCTTCAGCCCCAAGACAGTAGAAGGTCGATGTGA	2178	0.477	MAVTVNTTVSTPTHTTSTSSIFSISRNSKPFILRPLKRHLPLLAPLKCVQPRSASTPSKPNPISCSALTSSPSQTSELVVPSKLQYLAEEFRALREPVERVKRLLHYAALMAPMEDSGRVDANRVMGCTARVWADVRIDEEGKVRVAADSDSEITRGFCACLVWVLDGSEVEEVLKVTSDDLVGLNVGLPGAGGSGRSRVNTWHNVLVNMQKRTKQLVAQREGKVPFEPFPSLVVSADAVFPKGSYAEAQAKYLFPNELKVNELVNVLKEKKIGVVAHFYMDPEVQGILTAAQKQWPHIHISDSLVMADTAVKMAKAGCQFITVLGVDFMSENVRAILDQAGFSEVGVYRMSNERIGCSLADAAATPTYMEYLKAASRSTSLHVIYINTKLETKAYAHELVPTITCTSSNVVQTILQAFAQVPDLSIWYGPDSYMGANIKELFQQMTKMTDEEIAAIHHEHSQDSIRSLLPRLHYYQDGTCMVHHLFGHEVVEKIKEMYCDAFLTAHLEVPGEMFSLAMEAKRRGMGVVGSTQNILDFIKDRVQEALDRNINDHLQFILGTESGMVTSIVAAIRSLLEPAKSSSQRAKVTVEIVFPVSSDSISKTTSSLSSGLPSAKVGDIILPVVPGIASGEGCSIHGGCASCPYMKMNSLSSLLKVCHHLPDEENILSAYKAEQFKLQTPNGKSVADVGCEPILHMRNFQAAKKLPEKLVDQILQPQDSRRSM	725

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu6g1442	725	SUPERFAMILY	SufE/NifU	75	217	-	-
	Ssu6g1442	725	PANTHER	QUINOLINATE SYNTHETASE A	229	715	IPR003473	GO:0008987\|GO:0009435\|GO:0051539
	Ssu6g1442	725	MobiDBLite	consensus disorder prediction	1	20	-	-
	Ssu6g1442	725	Pfam	Fe-S metabolism associated domain	89	212	IPR003808	-
	Ssu6g1442	725	Gene3D	-	481	576	IPR036094	GO:0008987\|GO:0009435\|GO:0051539
	Ssu6g1442	725	SUPERFAMILY	NadA-like	261	666	IPR036094	GO:0008987\|GO:0009435\|GO:0051539
	Ssu6g1442	725	Pfam	Quinolinate synthetase A protein	265	571	IPR003473	GO:0008987\|GO:0009435\|GO:0051539
	Ssu6g1442	725	Gene3D	-	66	217	-	-
	Ssu6g1442	725	Gene3D	-	365	453	IPR036094	GO:0008987\|GO:0009435\|GO:0051539
	Ssu6g1442	725	Gene3D	-	256	364	IPR036094	GO:0008987\|GO:0009435\|GO:0051539

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu6g1442	Ssu-Chr6	23546427	23551015	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu6g1442	K03517		-	zju:107418310	1049.27

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu6g1442	6	23546427	23551015	Ssu6g1442	6	23546427	23551015	ECH